miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 375 bits (189), Expect = e-103
Identities = 217/226 (96%), Gaps = 4/226 (1%)
Strand = Plus / Plus
Query: 1 gtttgaagcggagctcctatcattccaatgaagggtcgttccgaagggctggatccgctg 60
||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||
Sbjct: 3 gtttgaagcggagctcctatcattccaatgaagggtcgtaccgaagggccggttccgctg 62
Query: 61 ctcgttcatggttcccactatcctatctcatcatgtgtatatatgtaa----tccatgtg 116
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 63 ctcgttcatggttcccactatcctatctcatcatgtgtatatatgtatgtattccatggg 122
Query: 117 ggagggtttctctcgtctttgagataggcttgtggtttgcatgaccgaggagctgcaccg 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ggagggtttctctcgtctttgagataggcttgtggtttgcatgaccgaggagctgcaccg 182
Query: 177 cccccttgctggccgctctttggattgaagggagctctgcatcctg 222
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 cccccttgctggccgctctttggattgaagggagctctgcatcctg 228
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 174 bits (88), Expect = 3e-43
Identities = 91/92 (98%)
Strand = Plus / Plus
Query: 131 gtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggcc 190
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 148 gtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggcc 207
Query: 191 gctctttggattgaagggagctctgcatcctg 222
||||||||||||||||||||||||||||||||
Sbjct: 208 gctctttggattgaagggagctctgcatcctg 239
Score = 103 bits (52), Expect = 1e-21
Identities = 83/92 (90%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 5 gaagcggagctcctatcattccaatgaagggtcgttccgaagggctggatccgctgctcg 64
|||||| |||||||||||||||||||||||| | || | ||| ||| |||||||||||
Sbjct: 7 gaagcgaagctcctatcattccaatgaagggcccttttcatggg-tggttccgctgctcg 65
Query: 65 ttcatggttcccactatcctatctcatcatgt 96
||||||||||||||||||||||||||||||||
Sbjct: 66 ttcatggttcccactatcctatctcatcatgt 97
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 93.7 bits (47), Expect = 1e-18
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 137 gagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctctt 196
|||||||||||||||||||||||||| |||||| | | | | |||||||| || |||||
Sbjct: 97 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 156
Query: 197 tggattgaagggagctctgcatc 219
|||||||||||||||||||||||
Sbjct: 157 tggattgaagggagctctgcatc 179
Score = 54.0 bits (27), Expect = 9e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 57 gctgctcgttcatggttcccactatcctatctcat 91
|||||| |||||||||||||||||| |||||||||
Sbjct: 55 gctgcttgttcatggttcccactattctatctcat 89
>RF00638;MIR159;EU947090.1/674-895 4577:Zea mays
Length = 222
Score = 91.7 bits (46), Expect = 4e-18
Identities = 77/86 (89%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 135 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgccccctt-gctggccgct 193
||||||| |||||||||||||||||||||||||||||| || |||||| | || |||||
Sbjct: 129 ttgagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgct 188
Query: 194 ctttggattgaagggagctctgcatc 219
|||||| ||||||||||||||||||
Sbjct: 189 gtttggagtgaagggagctctgcatc 214
Score = 58.0 bits (29), Expect = 5e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 57 gctgctcgttcatggttcccactatcctatctcatca 93
||||||||||||||||||||||| ||| |||||||||
Sbjct: 58 gctgctcgttcatggttcccactgtcccatctcatca 94
>RF00638;MIR159;ABXC01001787.1/15180-14953 4558:Sorghum bicolor
(sorghum)
Length = 228
Score = 85.7 bits (43), Expect = 2e-16
Identities = 74/83 (89%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 135 ttgagataggcttgtggtttgcatgaccgaggagctgcaccg-cccccttgctggccgct 193
||||||| ||| ||||||||||||||||||||||||||| || |||| ||| | |||||
Sbjct: 135 ttgagatgggcctgtggtttgcatgaccgaggagctgcatcgtcccctttgtcgaccgct 194
Query: 194 ctttggattgaagggagctctgc 216
| |||||||||||||||||||||
Sbjct: 195 cgttggattgaagggagctctgc 217
Score = 65.9 bits (33), Expect = 2e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 57 gctgctcgttcatggttcccactatcctatctcatca 93
||||||||||||||||||||||||||| |||||||||
Sbjct: 58 gctgctcgttcatggttcccactatcccatctcatca 94
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 192 ctctttggattgaagggagctctgcatc 219
||||||||||||||||||||||||||||
Sbjct: 239 ctctttggattgaagggagctctgcatc 266
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 193 tctttggattgaagggagctctgcatc 219
|||||||||||||||||||||| ||||
Sbjct: 174 tctttggattgaagggagctcttcatc 200
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 193 tctttggattgaagggagctctgcatc 219
|||||||||||||||||||||| ||||
Sbjct: 170 tctttggattgaagggagctctacatc 196
