miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00787;mir-288;AC093440.2/172834-172738 7227:Drosophila
melanogaster (fruit fly)
Length = 97
Score = 167 bits (84), Expect = 3e-41
Identities = 90/92 (97%)
Strand = Plus / Plus
Query: 5 catgtcgtaattagcggagcacggcgttgccggcgataattaatgacggtggtcacgttg 64
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 5 catgtcgtaattagcggagcacggcatcgccggcgataattaatgacggtggtcacgttg 64
Query: 65 gtttcatgtcgatttcatttcatgacacggcc 96
||||||||||||||||||||||||||||||||
Sbjct: 65 gtttcatgtcgatttcatttcatgacacggcc 96
>RF00787;mir-288;AANI01016239.1/44496-44592 7244:Drosophila
virilis
Length = 97
Score = 121 bits (61), Expect = 2e-27
Identities = 82/89 (92%)
Strand = Plus / Plus
Query: 8 gtcgtaattagcggagcacggcgttgccggcgataattaatgacggtggtcacgttggtt 67
|||||||||||| | |||| |||||| |||||||||||||||| ||||||||||||||
Sbjct: 8 gtcgtaattagctgtgcacaacgttgctggcgataattaatgactttggtcacgttggtt 67
Query: 68 tcatgtcgatttcatttcatgacacggcc 96
|||||||||||||||||||||||||||||
Sbjct: 68 tcatgtcgatttcatttcatgacacggcc 96
>RF00787;mir-288;AAQB01006401.1/336794-336697 7260:Drosophila
willistoni
Length = 98
Score = 115 bits (58), Expect = 1e-25
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 35 cggcgataattaatgacggtggtcacgttggtttcatgtcgatttcatttcatgacacgg 94
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 36 cggcgataattaatgacgttggtcacgttggtttcatgtcgatttcatttcatgacacgg 95
Query: 95 cc 96
||
Sbjct: 96 cc 97
