miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00858;mir-306;AC093097.1/71496-71578 7227:Drosophila
melanogaster (fruit fly)
Length = 83
Score = 149 bits (75), Expect = 7e-36
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 3 ccactcggtggctcaggtacttagtgactctcaatgcttttgacattttgggggtcactc 62
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccactcgatggctcaggtacttagtgactctcaatgcttttgacattttgggggtcactc 60
Query: 63 tgtgcctgtgctgccagtaggac 85
|||||||||||||||||| ||||
Sbjct: 61 tgtgcctgtgctgccagtgggac 83
>RF00858;mir-306;AAPP01015742.1/196327-196245 7217:Drosophila
ananassae
Length = 83
Score = 87.7 bits (44), Expect = 2e-17
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 3 ccactcggtggctcaggtacttagtgactctcaatgcttttgacattttgggggtcactc 62
||||| ||| ||||||||||||||||||||||||||| |||||||||||||| | ||||
Sbjct: 1 ccacttggtagctcaggtacttagtgactctcaatgcatttgacattttgggagccactt 60
Query: 63 tgtgcctg 70
||||||||
Sbjct: 61 tgtgcctg 68
>RF00858;mir-306;AAFS01000359.1/26008-26091 46245:Drosophila
pseudoobscura pseudoobscura
Length = 84
Score = 77.8 bits (39), Expect = 2e-14
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 12 ggctcaggtacttagtgactctcaatgcttttgacattttgggggtcactctgtgcctg 70
||||||||||||||||||||||||||||||| ||||| ||| | ||| |||||||||||
Sbjct: 11 ggctcaggtacttagtgactctcaatgctttcgacatcttgagagtctctctgtgcctg 69
>RF00858;mir-306;AAPT01019705.1/15024-15115 7222:Drosophila
grimshawi
Length = 92
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 gctcaggtacttagtgactctcaat 37
|||||||||||||||||||||||||
Sbjct: 11 gctcaggtacttagtgactctcaat 35
>RF00858;mir-306;AAPU01010522.1/87951-88041 7230:Drosophila
mojavensis
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 gctcaggtacttagtgactctcaat 37
|||||||||||||||||||||||||
Sbjct: 11 gctcaggtacttagtgactctcaat 35
>RF00858;mir-306;AAQB01008360.1/26170-26086 7260:Drosophila
willistoni
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 gctcaggtacttagtgactctcaa 36
||||||||||||||||||||||||
Sbjct: 11 gctcaggtacttagtgactctcaa 34
>RF00858;mir-306;AAQB01009472.1/21237-21153 7260:Drosophila
willistoni
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 gctcaggtacttagtgactctcaa 36
||||||||||||||||||||||||
Sbjct: 11 gctcaggtacttagtgactctcaa 34
