miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00743;mir-308;AE013599.4/10103369-10103307 7227:Drosophila
melanogaster (fruit fly)
Length = 63
Score = 101 bits (51), Expect = 9e-22
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 1 ctcgcagtatatttttgtgttttgtttccttttgcaactcaaatcacaggattatactgt 60
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 1 ctcgcagtatatttttgtgttttgtttcgttttgcaatccaaatcacaggattatactgt 60
Query: 61 gag 63
|||
Sbjct: 61 gag 63
>RF00743;mir-308;AAPU01010142.1/147078-147139 7230:Drosophila
mojavensis
Length = 62
Score = 69.9 bits (35), Expect = 3e-12
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 1 ctcgcagtatatttttgtgttttgtttccttttgcaactcaaatcacaggattatactgt 60
||||||||||||||||||||||||||| || | || ||||||||||||||||||||||
Sbjct: 1 ctcgcagtatatttttgtgttttgttt-attataaaaatcaaatcacaggattatactgt 59
Query: 61 gag 63
|||
Sbjct: 60 gag 62
>RF00743;mir-308;AADE01001573.1/8261-8200 46245:Drosophila
pseudoobscura pseudoobscura
Length = 62
Score = 61.9 bits (31), Expect = 8e-10
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 1 ctcgcagtatatttttgtgttttgtttccttttgcaactcaaatcacaggattatactgt 60
|||||||||||||||||||||||| || | || ||| |||||||||||||||||||||
Sbjct: 1 ctcgcagtatatttttgtgttttg-ttgtgtctgaaacgcaaatcacaggattatactgt 59
Query: 61 gag 63
|||
Sbjct: 60 gag 62
>RF00743;mir-308;AAWU01008421.1/27722-27788 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 67
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 38 ctcaaatcacaggattatactgtgag 63
|||||||||||||| |||||||||||
Sbjct: 42 ctcaaatcacaggagtatactgtgag 67
>RF00743;mir-308;AAGE02006324.1/6463-6527 7159:Aedes aegypti
(yellow fever mosquito)
Length = 65
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 38 ctcaaatcacaggattatactgtgag 63
|||||||||||||| |||||||||||
Sbjct: 40 ctcaaatcacaggagtatactgtgag 65
>RF00743;mir-308;ABKQ02024255.1/111320-111257 377270:Anopheles
gambiae S
Length = 64
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 39 tcaaatcacaggattatactgtgag 63
||||||||||||| |||||||||||
Sbjct: 40 tcaaatcacaggagtatactgtgag 64
