miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00818;mir-318;AAGH01004927.1/3240-3173 7240:Drosophila simulans
Length = 68
Score = 111 bits (56), Expect = 1e-24
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 1 tttatgggatacacacagttcagttttgtcgcactacaagcatcactgggctttgtttat 60
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 1 tttatgggatacacacagttcagttttgtcacactttaagcatcactgggctttgtttat 60
Query: 61 ctcatgag 68
||||||||
Sbjct: 61 ctcatgag 68
>RF00818;mir-318;AAQB01008948.1/667-736 7260:Drosophila willistoni
Length = 70
Score = 79.8 bits (40), Expect = 4e-15
Identities = 61/67 (91%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 1 tttatgggatacacacagttcagttttgtcgcactaca--agcatcactgggctttgttt 58
|||||||||||||| ||||||||||||||||| | || ||||||||||||||||||||
Sbjct: 1 tttatgggatacaccaagttcagttttgtcgcattccacgagcatcactgggctttgttt 60
Query: 59 atctcat 65
|||||||
Sbjct: 61 atctcat 67
>RF00818;mir-318;AAPU01010980.1/46750-46818 7230:Drosophila
mojavensis
Length = 69
Score = 67.9 bits (34), Expect = 1e-11
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 tttatgggatacacacagttcagttttgtcgcac-tacaagcatcactgggctttgttta 59
|||||||||||||| |||||||||||||| | | |||||||||||||||||||||||
Sbjct: 1 tttatgggatacactaagttcagttttgtcagatgtccaagcatcactgggctttgttta 60
Query: 60 tctcat 65
||||||
Sbjct: 61 tctcat 66
>RF00818;mir-318;AAPP01019505.1/87887-87819 7217:Drosophila
ananassae
Length = 69
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 39 agcatcactgggctttgtttatctcat 65
|||||||||||||||||||||||||||
Sbjct: 40 agcatcactgggctttgtttatctcat 66
