miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 293 bits (148), Expect = 6e-79
Identities = 217/238 (91%), Gaps = 9/238 (3%)
Strand = Plus / Plus
Query: 10 gggtttgaagcggagctcctatcattccaatgaagggtcgttccgaagggctggttccgc 69
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 1 gggtttgaagcggagctcctatcattccaatgaagggtcgtaccgaagggccggttccgc 60
Query: 70 tgctcgttcatggttcccactatcctatctcatctggtgtata----tatgtaatccatn 125
|||||||||||||||||||||||||||||||||| ||||||| |||||| |||||
Sbjct: 61 tgctcgttcatggttcccactatcctatctcatcatgtgtatatatgtatgtattccat- 119
Query: 126 nnnnnnagggtttctctcgtctttgagataaggccttgtggtttgcatgaccgaggagct 185
|||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 120 -gggggagggtttctctcgtctttgagata--ggcttgtggtttgcatgaccgaggagct 176
Query: 186 gcaccgcccccttgctgggcgctcttttggattgaagggagctctgcatcctgatcca 243
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 177 gcaccgcccccttgctggccgctc-tttggattgaagggagctctgcatcctgatcca 233
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 137 bits (69), Expect = 8e-32
Identities = 94/100 (94%), Gaps = 3/100 (3%)
Strand = Plus / Plus
Query: 144 gtctttgagataaggccttgtggtttgcatgaccgaggagctgcaccgcccccttgctgg 203
|||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 148 gtctttgagatagg--cttgtggtttgcatgaccgaggagctgcaccgtccccttgctgg 205
Query: 204 gcgctcttttggattgaagggagctctgcatcctgatcca 243
||||| |||||||||||||||||||||||||||||||||
Sbjct: 206 ccgctc-tttggattgaagggagctctgcatcctgatcca 244
Score = 103 bits (52), Expect = 1e-21
Identities = 80/88 (90%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 16 gaagcggagctcctatcattccaatgaagggtcgttccgaagggctggttccgctgctcg 75
|||||| |||||||||||||||||||||||| | || | ||| |||||||||||||||
Sbjct: 7 gaagcgaagctcctatcattccaatgaagggcccttttcatggg-tggttccgctgctcg 65
Query: 76 ttcatggttcccactatcctatctcatc 103
||||||||||||||||||||||||||||
Sbjct: 66 ttcatggttcccactatcctatctcatc 93
>RF00638;MIR159;ABXC01001787.1/15180-14953 4558:Sorghum bicolor
(sorghum)
Length = 228
Score = 63.9 bits (32), Expect = 1e-09
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 68 gctgctcgttcatggttcccactatcctatctcatc 103
||||||||||||||||||||||||||| ||||||||
Sbjct: 58 gctgctcgttcatggttcccactatcccatctcatc 93
Score = 58.0 bits (29), Expect = 6e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 162 tgtggtttgcatgaccgaggagctgcaccgccccctt 198
||||||||||||||||||||||||||| || ||||||
Sbjct: 147 tgtggtttgcatgaccgaggagctgcatcgtcccctt 183
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 61.9 bits (31), Expect = 4e-09
Identities = 71/83 (85%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 160 cttgtggtttgcatgaccgaggagctgcaccgcccccttgctgggcgctcttttggattg 219
|||||||||||||||||| |||||| | | | | |||||||| | ||| |||||||||
Sbjct: 105 cttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactc-tttggattg 163
Query: 220 aagggagctctgcatcctgatcc 242
|||||||||||||||| ||||||
Sbjct: 164 aagggagctctgcatcttgatcc 186
Score = 54.0 bits (27), Expect = 1e-06
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 68 gctgctcgttcatggttcccactatcctatctcat 102
|||||| |||||||||||||||||| |||||||||
Sbjct: 55 gctgcttgttcatggttcccactattctatctcat 89
>RF00638;MIR159;EU947090.1/674-895 4577:Zea mays
Length = 222
Score = 58.0 bits (29), Expect = 6e-08
Identities = 67/77 (87%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 160 cttgtggtttgcatgaccgaggagctgcaccgccccctt-gctgggcgctcttttggatt 218
|||||||||||||||||||||||||||| || |||||| | || |||| |||||| |
Sbjct: 139 cttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgct-gtttggagt 197
Query: 219 gaagggagctctgcatc 235
|||||||||||||||||
Sbjct: 198 gaagggagctctgcatc 214
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 68 gctgctcgttcatggttcccactatcctatctcatc 103
||||||||||||||||||||||| ||| ||||||||
Sbjct: 58 gctgctcgttcatggttcccactgtcccatctcatc 93
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 211 tttggattgaagggagctctgcatc 235
|||||||||||||||||||||||||
Sbjct: 242 tttggattgaagggagctctgcatc 266
