miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00241;mir-8;ABJB010621523.1/197-271 6945:Ixodes scapularis
(black-legged tick)
Length = 75
Score = 60.0 bits (30), Expect = 3e-09
Identities = 54/61 (88%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 1 catcttaccgggcagcattagattgcgactgagatttctaatactgtcaggtaacgatgt 60
||||||||| | ||||||||||||| | |||| |||||||||||||||||||| |||||
Sbjct: 10 catcttaccagacagcattagattgagcctga--tttctaatactgtcaggtaaagatgt 67
Query: 61 c 61
|
Sbjct: 68 c 68
>RF00241;mir-8;AAJJ01001355.1/29616-29540 7070:Tribolium castaneum
(red flour beetle)
Length = 77
Score = 58.0 bits (29), Expect = 1e-08
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 1 catcttaccgggcagcattagattgcgactgagatttctaatactgtcaggtaacgatgt 60
|||||||||||||||||||||||| | | | | ||||||||||||||||||| |||||
Sbjct: 10 catcttaccgggcagcattagattacattttatacttctaatactgtcaggtaaagatgt 69
Query: 61 c 61
|
Sbjct: 70 c 70
>RF00241;mir-8;AAAB01008986.1/3020387-3020310 180454:Anopheles
gambiae str. PEST
Length = 78
Score = 54.0 bits (27), Expect = 2e-07
Identities = 56/63 (88%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 1 catcttaccgggcagcattagat-tgcga-ctgagatttctaatactgtcaggtaacgat 58
||||||||||||||||||||||| || | | || ||||||||||||||||||||| |||
Sbjct: 10 catcttaccgggcagcattagatatgttatcggatatttctaatactgtcaggtaaagat 69
Query: 59 gtc 61
|||
Sbjct: 70 gtc 72
>RF00241;mir-8;AAZO01008551.1/16828-16905 121224:Pediculus humanus
corporis (human body louse)
Length = 78
Score = 52.0 bits (26), Expect = 7e-07
Identities = 54/62 (87%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 1 catcttaccgggcagcattagattgcgactgag-atttctaatactgtcaggtaacgatg 59
||||||||||||||||||||||||| | || | ||||||||||||||||||| ||||
Sbjct: 10 catcttaccgggcagcattagattgattttaagtaattctaatactgtcaggtaatgatg 69
Query: 60 tc 61
||
Sbjct: 70 tc 71
>RF00241;mir-8;AADG05004155.1/1299-1373 7460:Apis mellifera (honey
bee)
Length = 75
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 catcttaccgggcagcattagattg 25
|||||||||||||||||||||||||
Sbjct: 10 catcttaccgggcagcattagattg 34
>RF00241;mir-8;AAQB01006282.1/186530-186609 7260:Drosophila
willistoni
Length = 80
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 catcttaccgggcagcattagatt 24
||||||||||||||||||||||||
Sbjct: 10 catcttaccgggcagcattagatt 33
>RF00241;mir-8;AAPU01010182.1/5430-5508 7230:Drosophila mojavensis
Length = 79
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 catcttaccgggcagcattagatt 24
||||||||||||||||||||||||
Sbjct: 10 catcttaccgggcagcattagatt 33
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 37 tctaatactgtcaggtaacgatgtc 61
|||||||||||||||||| ||||||
Sbjct: 49 tctaatactgtcaggtaaagatgtc 73
>RF00241;mir-8;BAAB01175925.1/123-47 7091:Bombyx mori (domestic
silkworm)
Length = 77
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 35 tttctaatactgtcaggtaacgatgtc 61
|||||||||||||||||||| ||||||
Sbjct: 45 tttctaatactgtcaggtaaagatgtc 71
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 catcttaccgggcagcattaga 22
||||||||||||||||||||||
Sbjct: 10 catcttaccgggcagcattaga 31
>RF00241;mir-8;ABLF01004189.1/21301-21379 7029:Acyrthosiphon pisum
(pea aphid)
Length = 79
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 37 tctaatactgtcaggtaacgatgtc 61
|||||||||||||||||| ||||||
Sbjct: 48 tctaatactgtcaggtaatgatgtc 72
