miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00967;mir-281;AAJJ01001668.1/5737-5811 7070:Tribolium castaneum
(red flour beetle)
Length = 75
Score = 58.0 bits (29), Expect = 1e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 1 aagagagctatccgtcgacagtacagtgagtaaactgtcatggagttgctctcttta 57
||||||||||||||||||||||| | || ||||||||||||||||||||||||
Sbjct: 11 aagagagctatccgtcgacagtatataatttacactgtcatggagttgctctcttta 67
>RF00967;mir-281;ABEP02022249.1/34089-34173 7739:Branchiostoma
floridae (Florida lancelet)
Length = 85
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 34 actgtcatggagttgctctcttt 56
|||||||||||||||||||||||
Sbjct: 51 actgtcatggagttgctctcttt 73
>RF00967;mir-281;AABS01000211.1/21157-21238 7719:Ciona
intestinalis
Length = 82
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 34 actgtcatggagttgctctctt 55
||||||||||||||||||||||
Sbjct: 46 actgtcatggagttgctctctt 67
>RF00249;mir-46;ABLG01000135.1/98827-98917 6305:Meloidogyne hapla
Length = 91
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 35 ctgtcatggagttgctctctt 55
|||||||||||||||||||||
Sbjct: 64 ctgtcatggagttgctctctt 84
>RF00249;mir-46;AAQA01003330.1/1190-1256 6279:Brugia malayi
Length = 67
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 33 aactgtcatggagttgctctcttta 57
|||||||||||| ||||||||||||
Sbjct: 38 aactgtcatggaattgctctcttta 62
