miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 347 bits (175), Expect = 5e-95
Identities = 224/237 (94%), Gaps = 8/237 (3%)
Strand = Plus / Plus
Query: 9 gggtttgaagcggagctcctatcattccaatgaagggnncgttccgaagggctggttccg 68
||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||
Sbjct: 1 gggtttgaagcggagctcctatcattccaatgaagggt-cgtaccgaagggccggttccg 59
Query: 69 ctgctcgttcatggttcccactatcctatctcatcatgtgtatatatgtaa----tccat 124
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 60 ctgctcgttcatggttcccactatcctatctcatcatgtgtatatatgtatgtattccat 119
Query: 125 tggggggagggtttctctcgtctttgagatnaggnttgtggtttgcatgaccgaggagct 184
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 120 --gggggagggtttctctcgtctttgagat-aggcttgtggtttgcatgaccgaggagct 176
Query: 185 gcaccgcccccttgctggccgctctttggattgaagggagctctgcatcctgatcca 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 gcaccgcccccttgctggccgctctttggattgaagggagctctgcatcctgatcca 233
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 165 bits (83), Expect = 4e-40
Identities = 95/98 (96%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 144 gtctttgagatnaggnttgtggtttgcatgaccgaggagctgcaccgcccccttgctggc 203
||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 148 gtctttgagat-aggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggc 206
Query: 204 cgctctttggattgaagggagctctgcatcctgatcca 241
||||||||||||||||||||||||||||||||||||||
Sbjct: 207 cgctctttggattgaagggagctctgcatcctgatcca 244
Score = 111 bits (56), Expect = 5e-24
Identities = 84/93 (90%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 15 gaagcggagctcctatcattccaatgaagggnncgttccgaagggctggttccgctgctc 74
|||||| |||||||||||||||||||||||| | || | | || ||||||||||||||
Sbjct: 7 gaagcgaagctcctatcattccaatgaagggcccttttc--atgggtggttccgctgctc 64
Query: 75 gttcatggttcccactatcctatctcatcatgt 107
|||||||||||||||||||||||||||||||||
Sbjct: 65 gttcatggttcccactatcctatctcatcatgt 97
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 83.8 bits (42), Expect = 1e-15
Identities = 74/85 (87%)
Strand = Plus / Plus
Query: 156 aggnttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctctttggat 215
||| ||||||||||||||||| |||||| | | | | |||||||| || ||||||||||
Sbjct: 102 aggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctttggat 161
Query: 216 tgaagggagctctgcatcctgatcc 240
|||||||||||||||||| ||||||
Sbjct: 162 tgaagggagctctgcatcttgatcc 186
Score = 54.0 bits (27), Expect = 1e-06
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 68 gctgctcgttcatggttcccactatcctatctcat 102
|||||| |||||||||||||||||| |||||||||
Sbjct: 55 gctgcttgttcatggttcccactattctatctcat 89
>RF00638;MIR159;EU947090.1/674-895 4577:Zea mays
Length = 222
Score = 77.8 bits (39), Expect = 7e-14
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 160 ttgtggtttgcatgaccgaggagctgcaccgccccctt-gctggccgctctttggattga 218
||||||||||||||||||||||||||| || |||||| | || ||||| |||||| |||
Sbjct: 140 ttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgctgtttggagtga 199
Query: 219 agggagctctgcatc 233
|||||||||||||||
Sbjct: 200 agggagctctgcatc 214
Score = 58.0 bits (29), Expect = 6e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 68 gctgctcgttcatggttcccactatcctatctcatca 104
||||||||||||||||||||||| ||| |||||||||
Sbjct: 58 gctgctcgttcatggttcccactgtcccatctcatca 94
>RF00638;MIR159;ABXC01001787.1/15180-14953 4558:Sorghum bicolor
(sorghum)
Length = 228
Score = 77.8 bits (39), Expect = 7e-14
Identities = 64/71 (90%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 161 tgtggtttgcatgaccgaggagctgcaccg-cccccttgctggccgctctttggattgaa 219
||||||||||||||||||||||||||| || |||| ||| | |||||| ||||||||||
Sbjct: 147 tgtggtttgcatgaccgaggagctgcatcgtcccctttgtcgaccgctcgttggattgaa 206
Query: 220 gggagctctgc 230
|||||||||||
Sbjct: 207 gggagctctgc 217
Score = 65.9 bits (33), Expect = 3e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 68 gctgctcgttcatggttcccactatcctatctcatca 104
||||||||||||||||||||||||||| |||||||||
Sbjct: 58 gctgctcgttcatggttcccactatcccatctcatca 94
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 206 ctctttggattgaagggagctctgcatc 233
||||||||||||||||||||||||||||
Sbjct: 239 ctctttggattgaagggagctctgcatc 266
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 207 tctttggattgaagggagctctgcatc 233
|||||||||||||||||||||| ||||
Sbjct: 174 tctttggattgaagggagctcttcatc 200
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 207 tctttggattgaagggagctctgcatc 233
|||||||||||||||||||||| ||||
Sbjct: 170 tctttggattgaagggagctctacatc 196
