miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00725;mir-iab-4;AAJJ01001135.1/10616-10533 7070:Tribolium
castaneum (red flour beetle)
Length = 84
Score = 103 bits (52), Expect = 2e-22
Identities = 59/60 (98%), Gaps = 1/60 (1%)
Strand = Plus / Minus
Query: 1 tgttacgtatactgaaggtataccggacagaaatacactcaggatacattcagtatacgt 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 73 tgttacgtatactgaaggtataccggacagaaa-acactcaggatacattcagtatacgt 15
>RF00725;mir-iab-4;AAPU01010953.1/219687-219770 7230:Drosophila
mojavensis
Length = 84
Score = 87.7 bits (44), Expect = 1e-17
Identities = 57/60 (95%), Gaps = 1/60 (1%)
Strand = Plus / Minus
Query: 1 tgttacgtatactgaaggtataccggacagaaatacactcaggatacattcagtatacgt 60
||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||
Sbjct: 73 tgttacgtatactgaaggtataccggatagga-tacactcaggatacattcagtatacgt 15
>RF00725;mir-iab-4;AADK01004318.1/3463-3550 7091:Bombyx mori
(domestic silkworm)
Length = 88
Score = 73.8 bits (37), Expect = 2e-13
Identities = 57/63 (90%), Gaps = 3/63 (4%)
Strand = Plus / Minus
Query: 1 tgttacgtatactgaaggtataccggacagaaat---acactcaggatacattcagtata 57
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 77 tgttacgtatactgaaggtataccggacaagaatcgcgcactcaggatacattcagtata 18
Query: 58 cgt 60
|||
Sbjct: 17 cgt 15
>RF00725;mir-iab-4;ABKP02025153.1/22654-22737 377271:Anopheles
gambiae M
Length = 84
Score = 67.9 bits (34), Expect = 1e-11
Identities = 56/61 (91%), Gaps = 3/61 (4%)
Strand = Plus / Minus
Query: 1 tgttacgtatactgaaggtataccggacagaaata-cactcaggatacattcagtatacg 59
|||||||||||||||||||||||||| | || || ||||||||||||||||||||||||
Sbjct: 73 tgttacgtatactgaaggtataccgg--ataagtagcactcaggatacattcagtatacg 16
Query: 60 t 60
|
Sbjct: 15 t 15
>RF00725;mir-iab-4;ABJB010512107.1/48251-48167 6945:Ixodes
scapularis (black-legged tick)
Length = 85
Score = 67.9 bits (34), Expect = 1e-11
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 2 gttacgtatactgaaggtataccggacagaaatacactcaggatacattcagtatacg 59
|||||||||||||||||||||||||| | | |||||||||||||| ||||||||||
Sbjct: 73 gttacgtatactgaaggtataccggaaaattaaacactcaggatacactcagtatacg 16
>RF00725;mir-iab-4;ABLF01001794.1/37283-37372 7029:Acyrthosiphon
pisum (pea aphid)
Length = 90
Score = 65.9 bits (33), Expect = 5e-11
Identities = 57/65 (87%), Gaps = 5/65 (7%)
Strand = Plus / Minus
Query: 1 tgttacgtatactgaaggtataccggacag-----aaatacactcaggatacattcagta 55
|||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||
Sbjct: 79 tgttacgtatactgaaggtataccggacagttttataatgcactcaggatacatttagta 20
Query: 56 tacgt 60
|||||
Sbjct: 19 tacgt 15
