miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;AADG05003176.1/74572-74649 7460:Apis mellifera
(honey bee)
Length = 78
Score = 139 bits (70), Expect = 8e-33
Identities = 73/74 (98%)
Strand = Plus / Plus
Query: 16 actaacccgtagatccgaacttgtgggcttttttatatgcataccgcaagctcctatcta 75
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 5 actaacccgtagatccgaacttgtgggcttttttatatgtataccgcaagctcctatcta 64
Query: 76 ccggtacatgtagt 89
||||||||||||||
Sbjct: 65 ccggtacatgtagt 78
>RF00104;mir-10;BX663520.9/232508-232577 7955:Danio rerio
(zebrafish)
Length = 70
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 12 tgacactaacccgtagatccgaacttgtgg 41
|||||| |||||||||||||||||||||||
Sbjct: 1 tgacacaaacccgtagatccgaacttgtgg 30
>RF00104;mir-10;AAJJ01000960.1/12300-12233 7070:Tribolium
castaneum (red flour beetle)
Length = 68
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtggg 42
||||||||||||||||||||||||
Sbjct: 7 aacccgtagatccgaacttgtggg 30
>RF00104;mir-10;ABJB010963031.1/703-629 6945:Ixodes scapularis
(black-legged tick)
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 ctaacccgtagatccgaacttgtg 40
||||||||||||||||||||||||
Sbjct: 6 ctaacccgtagatccgaacttgtg 29
>RF00104;mir-10;AALT01443654.1/2056-2125 42254:Sorex araneus
(European shrew)
Length = 70
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtgg 41
|||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtgg 30
>RF00104;mir-10;AAPE01049372.1/3456-3524 59463:Myotis lucifugus
(little brown bat)
Length = 69
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtgg 41
|||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtgg 30
>RF00104;mir-10;AANU01118946.1/11450-11381 9544:Macaca mulatta
(rhesus monkey)
Length = 70
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtgg 41
|||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtgg 30
>RF00104;mir-10;ABRQ01450213.1/964-1033 9813:Procavia capensis
(cape rock hyrax)
Length = 70
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtgg 41
|||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtgg 30
>RF00104;mir-10;BX284646.4/46761-46692 7955:Danio rerio
(zebrafish)
Length = 70
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtgg 41
|||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtgg 30
>RF00104;mir-10;BAAF04030492.1/777-846 8090:Oryzias latipes
(Japanese medaka)
Length = 70
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtgg 41
|||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtgg 30
>RF00104;mir-10;ABIR01000029.1/41879-41953 6334:Trichinella
spiralis
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtg 40
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
>RF00104;mir-10;AAQA01000457.1/25556-25481 6279:Brugia malayi
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtg 40
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
>RF00104;mir-10;ABAV01011074.1/24648-24715 45351:Nematostella
vectensis (starlet sea anemone)
Length = 68
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 acccgtagatccgaacttgtgg 41
||||||||||||||||||||||
Sbjct: 9 acccgtagatccgaacttgtgg 30
>RF00104;mir-10;AAHX01054266.1/78515-78584 10116:Rattus norvegicus
(Norway rat)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtg 40
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
>RF00104;mir-10;AAWZ01029956.1/4910-4979 28377:Anolis carolinensis
(green anole)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtg 40
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
>RF00104;mir-10;ABQF01045478.1/2452-2521 59729:Taeniopygia guttata
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtg 40
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
>RF00104;mir-10;CAAB01004143.1/16784-16858 31033:Takifugu rubripes
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtg 40
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
>RF00104;mir-10;BAAF04027544.1/3636-3567 8090:Oryzias latipes
(Japanese medaka)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtg 40
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
>RF00104;mir-10;ABEP02005607.1/34557-34626 7739:Branchiostoma
floridae (Florida lancelet)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtg 40
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
>RF00104;mir-10;AAWU01000325.1/1900-1975 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtg 40
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
>RF00104;mir-10;AAGE02002929.1/307465-307539 7159:Aedes aegypti
(yellow fever mosquito)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtg 40
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
>RF00104;mir-10;AAAB01008964.1/2125227-2125303 180454:Anopheles
gambiae str. PEST
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtg 40
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29