miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00725;mir-iab-4;AAJJ01001135.1/10616-10533 7070:Tribolium
castaneum (red flour beetle)
Length = 84
Score = 121 bits (61), Expect = 1e-27
Identities = 68/69 (98%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 ccctgtacgtatactgaatgtatcctgagtgtatttctgtccggtataccttcagtatac 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 9 ccctgtacgtatactgaatgtatcctgagtgt-tttctgtccggtataccttcagtatac 67
Query: 61 gtaacagga 69
|||||||||
Sbjct: 68 gtaacagga 76
>RF00725;mir-iab-4;AAPU01010953.1/219687-219770 7230:Drosophila
mojavensis
Length = 84
Score = 89.7 bits (45), Expect = 4e-18
Identities = 58/61 (95%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 6 tacgtatactgaatgtatcctgagtgtatttctgtccggtataccttcagtatacgtaac 65
|||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct: 14 tacgtatactgaatgtatcctgagtgta-tcctatccggtataccttcagtatacgtaac 72
Query: 66 a 66
|
Sbjct: 73 a 73
>RF00725;mir-iab-4;AADK01004318.1/3463-3550 7091:Bombyx mori
(domestic silkworm)
Length = 88
Score = 83.8 bits (42), Expect = 2e-16
Identities = 62/68 (91%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 3 ctgtacgtatactgaatgtatcctgagtgt---atttctgtccggtataccttcagtata 59
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 11 ctgtacgtatactgaatgtatcctgagtgcgcgattcttgtccggtataccttcagtata 70
Query: 60 cgtaacag 67
||||||||
Sbjct: 71 cgtaacag 78
>RF00725;mir-iab-4;ABLF01001794.1/37283-37372 7029:Acyrthosiphon
pisum (pea aphid)
Length = 90
Score = 81.8 bits (41), Expect = 1e-15
Identities = 65/73 (89%), Gaps = 5/73 (6%)
Strand = Plus / Plus
Query: 1 ccctgtacgtatactgaatgtatcctgagtgtattt-----ctgtccggtataccttcag 55
||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||
Sbjct: 9 ccctgtacgtatactaaatgtatcctgagtgcattataaaactgtccggtataccttcag 68
Query: 56 tatacgtaacagg 68
|||||||||||||
Sbjct: 69 tatacgtaacagg 81
>RF00725;mir-iab-4;ABKP02025153.1/22654-22737 377271:Anopheles
gambiae M
Length = 84
Score = 67.9 bits (34), Expect = 1e-11
Identities = 56/61 (91%), Gaps = 3/61 (4%)
Strand = Plus / Plus
Query: 7 acgtatactgaatgtatcctgagtg-tatttctgtccggtataccttcagtatacgtaac 65
||||||||||||||||||||||||| || || | |||||||||||||||||||||||||
Sbjct: 15 acgtatactgaatgtatcctgagtgctacttat--ccggtataccttcagtatacgtaac 72
Query: 66 a 66
|
Sbjct: 73 a 73
>RF00725;mir-iab-4;ABJB010512107.1/48251-48167 6945:Ixodes
scapularis (black-legged tick)
Length = 85
Score = 67.9 bits (34), Expect = 1e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 8 cgtatactgaatgtatcctgagtgtatttctgtccggtataccttcagtatacgtaac 65
|||||||||| |||||||||||||| | | ||||||||||||||||||||||||||
Sbjct: 16 cgtatactgagtgtatcctgagtgtttaattttccggtataccttcagtatacgtaac 73
