miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00241;mir-8;AAJJ01001355.1/29616-29540 7070:Tribolium castaneum
(red flour beetle)
Length = 77
Score = 145 bits (73), Expect = 8e-35
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 actgttaacatcttaccgggcagcattagattacattttatacttctaatactgtcaggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 actgttaacatcttaccgggcagcattagattacattttatacttctaatactgtcaggt 61
Query: 61 aaagatgtcctcc 73
|||||||||||||
Sbjct: 62 aaagatgtcctcc 74
>RF00241;mir-8;AAZO01008551.1/16828-16905 121224:Pediculus humanus
corporis (human body louse)
Length = 78
Score = 77.8 bits (39), Expect = 2e-14
Identities = 67/74 (90%), Gaps = 3/74 (4%)
Strand = Plus / Plus
Query: 1 actgttaacatcttaccgggcagcattagattacatttta--tacttctaatactgtcag 58
|||||| ||||||||||||||||||||||||| |||||| || |||||||||||||||
Sbjct: 2 actgtttacatcttaccgggcagcattagatt-gattttaagtaattctaatactgtcag 60
Query: 59 gtaaagatgtcctc 72
|||| |||||||||
Sbjct: 61 gtaatgatgtcctc 74
>RF00241;mir-8;AADG05004155.1/1299-1373 7460:Apis mellifera (honey
bee)
Length = 75
Score = 71.9 bits (36), Expect = 1e-12
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 2 ctgttaacatcttaccgggcagcattagattacattttatacttctaatactgtcaggta 61
||||| ||||||||||||||||||||||||| | || | |||||||||||||||||||
Sbjct: 3 ctgttcacatcttaccgggcagcattagattgaagttga-ccttctaatactgtcaggta 61
Query: 62 aagatgtc 69
||||||||
Sbjct: 62 aagatgtc 69
>RF00241;mir-8;AAPU01010182.1/5430-5508 7230:Drosophila mojavensis
Length = 79
Score = 65.9 bits (33), Expect = 6e-11
Identities = 62/71 (87%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 2 ctgttaacatcttaccgggcagcattagattacatttt---atacttctaatactgtcag 58
||||| ||||||||||||||||||||||||| | ||| ||| ||||||||||||||
Sbjct: 3 ctgttcacatcttaccgggcagcattagattcctgttttaaataactctaatactgtcag 62
Query: 59 gtaaagatgtc 69
|||||||||||
Sbjct: 63 gtaaagatgtc 73
>RF00241;mir-8;BAAB01175925.1/123-47 7091:Bombyx mori (domestic
silkworm)
Length = 77
Score = 60.0 bits (30), Expect = 4e-09
Identities = 55/62 (88%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 9 catcttaccgggcagcattagattacattttatactt-ctaatactgtcaggtaaagatg 67
|||||||||||||||||||||| | | | |||| || ||||||||||||||||||||||
Sbjct: 10 catcttaccgggcagcattagagtcctgtctatattttctaatactgtcaggtaaagatg 69
Query: 68 tc 69
||
Sbjct: 70 tc 71
>RF00241;mir-8;AAAB01008986.1/3020387-3020310 180454:Anopheles
gambiae str. PEST
Length = 78
Score = 58.0 bits (29), Expect = 2e-08
Identities = 62/71 (87%), Gaps = 4/71 (5%)
Strand = Plus / Plus
Query: 2 ctgttaacatcttaccgggcagcattagattacatttt---atacttctaatactgtcag 58
||||| ||||||||||||||||||||||| || || | ||| |||||||||||||||
Sbjct: 3 ctgttcacatcttaccgggcagcattaga-tatgttatcggatatttctaatactgtcag 61
Query: 59 gtaaagatgtc 69
|||||||||||
Sbjct: 62 gtaaagatgtc 72
>RF00241;mir-8;AAQB01006282.1/186530-186609 7260:Drosophila
willistoni
Length = 80
Score = 54.0 bits (27), Expect = 2e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 2 ctgttaacatcttaccgggcagcattagatt 32
||||| |||||||||||||||||||||||||
Sbjct: 3 ctgttcacatcttaccgggcagcattagatt 33
>RF00241;mir-8;ABJB010621523.1/197-271 6945:Ixodes scapularis
(black-legged tick)
Length = 75
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 ttctaatactgtcaggtaaagatgtcc 70
|||||||||||||||||||||||||||
Sbjct: 43 ttctaatactgtcaggtaaagatgtcc 69
>RF00241;mir-8;ABLF01004189.1/21301-21379 7029:Acyrthosiphon pisum
(pea aphid)
Length = 79
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 45 tctaatactgtcaggtaaagatgtcctc 72
|||||||||||||||||| |||||||||
Sbjct: 48 tctaatactgtcaggtaatgatgtcctc 75
>RF00241;mir-8;AAUQ01070141.1/615-695 408171:epibiont metagenome
Length = 81
Score = 42.1 bits (21), Expect = 0.001
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 42 acttctaatactgtca-ggtaaagatgtcctcc 73
|||||||||||||||| ||||||||||| ||||
Sbjct: 46 acttctaatactgtcagggtaaagatgttctcc 78
