miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00838;mir-252;AAJJ01000151.1/90694-90592 7070:Tribolium
castaneum (red flour beetle)
Length = 103
Score = 172 bits (87), Expect = 5e-43
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 aaagactgtcctgttactaagtactagtgccgcaggagtacattcgacctcctgctgctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 aaagactgtcctgttactaagtactagtgccgcaggagtacattcgacctcctgctgctc 69
Query: 61 aagtgcttatcaatgggcacagaatga 87
|||||||||||||||||||||||||||
Sbjct: 70 aagtgcttatcaatgggcacagaatga 96
>RF00838;mir-252;AAGE02003685.1/79138-79037 7159:Aedes aegypti
(yellow fever mosquito)
Length = 102
Score = 60.0 bits (30), Expect = 5e-09
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 14 ttactaagtactagtgccgcaggagtacattcgacctcctgctgctcaagtgcttatc 71
||||||||||||||||||||||||| | ||| || | |||||||| ||||||||||||
Sbjct: 23 ttactaagtactagtgccgcaggag-agatttgaacccctgctgcccaagtgcttatc 79
>RF00838;mir-252;ABKP02026277.1/40376-40477 377271:Anopheles
gambiae M
Length = 102
Score = 60.0 bits (30), Expect = 5e-09
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 14 ttactaagtactagtgccgcaggagtacattcgacctcctgctgctcaagtgcttatc 71
||||||||||||||||||||||||| | |||| | | |||||||| ||||||||||||
Sbjct: 23 ttactaagtactagtgccgcaggag-agattctaacccctgctgcccaagtgcttatc 79
>RF00838;mir-252;AADG05011415.1/92-6 7460:Apis mellifera (honey
bee)
Length = 87
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 49 ctcctgctgctcaagtgcttatcaatggg 77
|||||||||||||||||||||||||||||
Sbjct: 59 ctcctgctgctcaagtgcttatcaatggg 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 taagtactagtgccgcaggagt 39
||||||||||||||||||||||
Sbjct: 9 taagtactagtgccgcaggagt 30
>RF00838;mir-252;AAZX01009285.1/3883-4013 7425:Nasonia vitripennis
(jewel wasp)
Length = 131
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 8 gtcctgttactaagtactagtgccgcaggagt 39
|||||||| |||||||||||||||||||||||
Sbjct: 19 gtcctgttcctaagtactagtgccgcaggagt 50
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 49 ctcctgctgctcaagtgcttatcaatgg 76
||||||||||||||||||||||||||||
Sbjct: 79 ctcctgctgctcaagtgcttatcaatgg 106
>RF00838;mir-252;AAQB01009407.1/423501-423388 7260:Drosophila
willistoni
Length = 114
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 14 ttactaagtactagtgccgcaggagt 39
||||||||||||||||||||||||||
Sbjct: 23 ttactaagtactagtgccgcaggagt 48
>RF00838;mir-252;AAZO01005296.1/52222-52118 121224:Pediculus
humanus corporis (human body louse)
Length = 105
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 ctaagtactagtgccgcaggagt 39
|||||||||||||||||||||||
Sbjct: 26 ctaagtactagtgccgcaggagt 48
>RF00838;mir-252;BABH01035687.1/2460-2355 7091:Bombyx mori
(domestic silkworm)
Length = 106
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tgttactaagtactagtgccgcaggag 38
|||| ||||||||||||||||||||||
Sbjct: 21 tgttcctaagtactagtgccgcaggag 47
>RF00838;mir-252;AAPP01019511.1/70614-70503 7217:Drosophila
ananassae
Length = 112
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 ctaagtactagtgccgcaggagt 39
|||||||||||||||||||||||
Sbjct: 25 ctaagtactagtgccgcaggagt 47
>RF00838;mir-252;AABU01002774.1/5715658-5715545 7227:Drosophila
melanogaster (fruit fly)
Length = 114
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 ctaagtactagtgccgcaggagt 39
|||||||||||||||||||||||
Sbjct: 26 ctaagtactagtgccgcaggagt 48
>RF00838;mir-252;AAFS01000005.1/103510-103621 46245:Drosophila
pseudoobscura pseudoobscura
Length = 112
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 ctaagtactagtgccgcaggagt 39
|||||||||||||||||||||||
Sbjct: 26 ctaagtactagtgccgcaggagt 48
>RF00838;mir-252;AAPT01019325.1/16150-16037 7222:Drosophila
grimshawi
Length = 114
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 ctaagtactagtgccgcaggagt 39
|||||||||||||||||||||||
Sbjct: 26 ctaagtactagtgccgcaggagt 48
>RF00838;mir-252;AAPU01011022.1/144995-144882 7230:Drosophila
mojavensis
Length = 114
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 ctaagtactagtgccgcaggagt 39
|||||||||||||||||||||||
Sbjct: 26 ctaagtactagtgccgcaggagt 48
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 48 cctcctgctgctcaagtgcttatcaa 73
||||||||||| ||||||||||||||
Sbjct: 68 cctcctgctgcccaagtgcttatcaa 93
>RF00838;mir-252;AANI01014608.1/9402-9515 7244:Drosophila virilis
Length = 114
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 ctaagtactagtgccgcaggagt 39
|||||||||||||||||||||||
Sbjct: 26 ctaagtactagtgccgcaggagt 48
