miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00706;mir-263;AAJJ01000084.1/138042-137956 7070:Tribolium
castaneum (red flour beetle)
Length = 87
Score = 149 bits (75), Expect = 6e-36
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 1 cttacgaaccttggcactggaagaattcacagattgtatttgaatcgtgattcttttaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 cttacgaaccttggcactggaagaattcacagattgtatttgaatcgtgattcttttaat 66
Query: 61 gccatatttcgtggg 75
|||||||||||||||
Sbjct: 67 gccatatttcgtggg 81
>RF00706;mir-263;AAGE02001908.1/33266-33358 7159:Aedes aegypti
(yellow fever mosquito)
Length = 93
Score = 54.0 bits (27), Expect = 2e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 2 ttacgaaccttggcactggaagaattcacag 32
||||||||||||||||||| |||||||||||
Sbjct: 8 ttacgaaccttggcactgggagaattcacag 38
>RF00706;mir-263;AAZO01001458.1/4323-4412 121224:Pediculus humanus
corporis (human body louse)
Length = 90
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 cttggcactggaagaattcacagat 34
|||||||||||||||||||||||||
Sbjct: 16 cttggcactggaagaattcacagat 40
>RF00706;mir-263;ABLF01012668.1/9002-8913 7029:Acyrthosiphon pisum
(pea aphid)
Length = 90
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 cgaaccttggcactggaagaattcacaga 33
|||| ||||||||||||||||||||||||
Sbjct: 11 cgaatcttggcactggaagaattcacaga 39
>RF00706;mir-263;AAZX01003415.1/15982-15890 7425:Nasonia
vitripennis (jewel wasp)
Length = 93
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 cttggcactggaagaattcacagat 34
|||||||||||||||||||||||||
Sbjct: 16 cttggcactggaagaattcacagat 40
>RF00706;mir-263;AADG05001725.1/30704-30614 7460:Apis mellifera
(honey bee)
Length = 91
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 cttggcactggaagaattcacagat 34
|||||||||||||||||||||||||
Sbjct: 16 cttggcactggaagaattcacagat 40
>RF00706;mir-263;ABJB010787234.1/6330-6423 6945:Ixodes scapularis
(black-legged tick)
Length = 94
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 ccttggcactggaagaattcacagat 34
||||||||||| ||||||||||||||
Sbjct: 15 ccttggcactgaaagaattcacagat 40
>RF00706;mir-263;ABKP02026803.1/39465-39371 377271:Anopheles
gambiae M
Length = 95
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 8 accttggcactggaagaattcacag 32
||||||||||||| |||||||||||
Sbjct: 14 accttggcactgggagaattcacag 38
