miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00754;mir-279;AAJJ01000015.1/255293-255381 7070:Tribolium
castaneum (red flour beetle)
Length = 89
Score = 129 bits (65), Expect = 4e-30
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 1 cttgatgggttcgggtctagtggcacggttttttcaacttcgtgactagatccacactca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 cttgatgggttcgggtctagtggcacggttttttcaacttcgtgactagatccacactca 73
Query: 61 ttaag 65
|||||
Sbjct: 74 ttaag 78
>RF00754;mir-279;AAZX01001678.1/20489-20404 7425:Nasonia
vitripennis (jewel wasp)
Length = 86
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 42 gtgactagatccacactcattaag 65
||||||||||||||||||||||||
Sbjct: 52 gtgactagatccacactcattaag 75
>RF00754;mir-279;AADG05002101.1/44929-44844 7460:Apis mellifera
(honey bee)
Length = 86
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 42 gtgactagatccacactcattaag 65
||||||||||||||||||||||||
Sbjct: 52 gtgactagatccacactcattaag 75
>RF00948;mir-996;AADG05007607.1/6578-6670 7460:Apis mellifera
(honey bee)
Length = 93
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 ttcgtgactagatccacactcat 61
|||||||||||||||||||||||
Sbjct: 54 ttcgtgactagatccacactcat 76
>RF00754;mir-279;AADG05007607.1/6579-6668 7460:Apis mellifera
(honey bee)
Length = 90
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 ttcgtgactagatccacactcat 61
|||||||||||||||||||||||
Sbjct: 53 ttcgtgactagatccacactcat 75
>RF00754;mir-279;AAWU01001985.1/8444-8349 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 96
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 gtgactagatccacactcattaa 64
|||||||||||||||||||||||
Sbjct: 59 gtgactagatccacactcattaa 81
>RF00754;mir-279;AAGE02017556.1/117017-116925 7159:Aedes aegypti
(yellow fever mosquito)
Length = 93
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 gtgactagatccacactcattaa 64
|||||||||||||||||||||||
Sbjct: 59 gtgactagatccacactcattaa 81
>RF00754;mir-279;ABKP02025583.1/99061-99151 377271:Anopheles
gambiae M
Length = 91
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 gtgactagatccacactcattaa 64
|||||||||||||||||||||||
Sbjct: 57 gtgactagatccacactcattaa 79
>RF00754;mir-279;AASU01038261.1/2067-2161 7240:Drosophila simulans
Length = 95
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 gtgactagatccacactcattaa 64
|||||||||||||||||||||||
Sbjct: 61 gtgactagatccacactcattaa 83
>RF00754;mir-279;AAQB01008976.1/68668-68761 7260:Drosophila
willistoni
Length = 94
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 gtgactagatccacactcattaa 64
|||||||||||||||||||||||
Sbjct: 60 gtgactagatccacactcattaa 82
>RF00754;mir-279;AANI01014375.1/46325-46420 7244:Drosophila
virilis
Length = 96
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 gtgactagatccacactcattaa 64
|||||||||||||||||||||||
Sbjct: 62 gtgactagatccacactcattaa 84
