miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00754;mir-279;AAJJ01000939.1/8868-8954 7070:Tribolium castaneum
(red flour beetle)
Length = 87
Score = 172 bits (87), Expect = 5e-43
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 6 ttatcctaaagtttttgatgggtgagggtttggtgcatgttttattttaatcatgactag 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttatcctaaagtttttgatgggtgagggtttggtgcatgttttattttaatcatgactag 60
Query: 66 atccacactcatccaaaaatttggtgt 92
|||||||||||||||||||||||||||
Sbjct: 61 atccacactcatccaaaaatttggtgt 87
>RF00754;mir-279;BABH01023670.1/7511-7596 7091:Bombyx mori
(domestic silkworm)
Length = 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 44/49 (89%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 32 ggtttggtgcatgttttattttaatcatgactagatccacactcatcca 80
||||| |||||||||| |||| | ||||||||||||||||||||||||
Sbjct: 27 ggtttagtgcatgttt-atttacaccatgactagatccacactcatcca 74
>RF00754;mir-279;ABJB010738028.1/1547-1632 6945:Ixodes scapularis
(black-legged tick)
Length = 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 tcatgactagatccacactcatcca 80
|||||||||||||||||||||||||
Sbjct: 50 tcatgactagatccacactcatcca 74
>RF00948;mir-996;BABH01019869.1/30785-30877 7091:Bombyx mori
(domestic silkworm)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 36 tggtgcatgttttattttaatcatgactagatccacactc 75
|||| |||||||||| || |||||||||||||||| ||||
Sbjct: 35 tggttcatgttttatattgatcatgactagatccatactc 74
>RF00948;mir-996;AADG05007607.1/6578-6670 7460:Apis mellifera
(honey bee)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 50 ttttaatcatgactagatccacactcatccaa 81
||||| || |||||||||||||||||||||||
Sbjct: 49 ttttattcgtgactagatccacactcatccaa 80
>RF00754;mir-279;ABLF01005773.1/5502-5409 7029:Acyrthosiphon pisum
(pea aphid)
Length = 94
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 catgactagatccacactcatcca 80
||||||||||||||||||||||||
Sbjct: 59 catgactagatccacactcatcca 82
>RF00754;mir-279;AADG05007607.1/6579-6668 7460:Apis mellifera
(honey bee)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 50 ttttaatcatgactagatccacactcatccaa 81
||||| || |||||||||||||||||||||||
Sbjct: 48 ttttattcgtgactagatccacactcatccaa 79
