miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AASG02001674.1/19617-19518 3988:Ricinus communis
          (castor bean)
          Length = 100

 Score =  105 bits (53), Expect = 1e-22
 Identities = 80/89 (89%)
 Strand = Plus / Plus

                                                                      
Query: 9  aacgggatattggtgcggttcaataagaaaacggtgctcaatactttttgagctccgctt 68
          |||||||||||||| ||||||||||||||||| |||||||| |  || || || | ||||
Sbjct: 6  aacgggatattggtccggttcaataagaaaacagtgctcaaaatgttatgggccctgctt 65

                                       
Query: 69 tttgattgagccgtgccaatatcacgtgc 97
          |||||||||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatcacgtgc 94




>RF00643;MIR171_1;AM449096.1/12478-12578 29760:Vitis vinifera
          Length = 101

 Score = 99.6 bits (50), Expect = 7e-21
 Identities = 81/89 (91%), Gaps = 3/89 (3%)
 Strand = Plus / Plus

                                                                      
Query: 10 acgggatattggtgcggttcaataagaaaacggtgctc--aatactttttgagctccgct 67
          ||||||||||||||||||||||||||||| | ||||||  ||| ||||||||| || | |
Sbjct: 7  acgggatattggtgcggttcaataagaaagcagtgctcgcaat-ctttttgagttctggt 65

                                       
Query: 68 ttttgattgagccgtgccaatatcacgtg 96
          |||||||||||||||||||||||||||||
Sbjct: 66 ttttgattgagccgtgccaatatcacgtg 94




>RF00643;MIR171_1;ABIM01016020.1/2222-2123 3649:Carica papaya
          (papaya)
          Length = 100

 Score = 93.7 bits (47), Expect = 4e-19
 Identities = 77/87 (88%)
 Strand = Plus / Plus

                                                                      
Query: 9  aacgggatattggtgcggttcaataagaaaacggtgctcaatactttttgagctccgctt 68
          |||||||||||||| ||||||||||||||||| ||||||    | | ||||| || ||||
Sbjct: 6  aacgggatattggtccggttcaataagaaaacagtgctctgatcgtgttgagttctgctt 65

                                     
Query: 69 tttgattgagccgtgccaatatcacgt 95
          |||||||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatcacgt 92




>RF00643;MIR171_1;BABK01058807.1/722-623 34305:Lotus japonicus
          Length = 100

 Score = 77.8 bits (39), Expect = 2e-14
 Identities = 75/87 (86%)
 Strand = Plus / Plus

                                                                      
Query: 9  aacgggatattggtgcggttcaataagaaaacggtgctcaatactttttgagctccgctt 68
          |||||||||||||| ||||||||||||||| |   |||| | || ||| |||||  | ||
Sbjct: 6  aacgggatattggtccggttcaataagaaagcaaagctcgaaacgtttggagctttgttt 65

                                     
Query: 69 tttgattgagccgtgccaatatcacgt 95
          |||||||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatcacgt 92




>RF00643;MIR171_1;AASG02000735.1/28318-28416 3988:Ricinus communis
          (castor bean)
          Length = 99

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 69 tttgattgagccgtgccaatatcacgtgc 97
          |||||||||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatcacgtgc 93




>RF00643;MIR171_1;BT035609.1/466-577 4577:Zea mays
          Length = 112

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 71  tgattgagccgtgccaatatcacgtgccactcg 103
           ||||||||||||||||||||||||| |||||||
Sbjct: 80  tgattgagccgtgccaatatcacgtcccactcg 112




>RF00643;MIR171_1;ABIM01020876.1/9287-9189 3649:Carica papaya
          (papaya)
          Length = 99

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 69 tttgattgagccgtgccaatatcacgtg 96
          ||||||||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatcacgtg 92




>RF00643;MIR171_1;AC134967.20/116067-116170 3880:Medicago
          truncatula (barrel medic)
          Length = 104

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 69 tttgattgagccgtgccaatatcacgtg 96
          ||||||||||||||||||||||||||||
Sbjct: 70 tttgattgagccgtgccaatatcacgtg 97




>RF00643;MIR171_1;ABXC01004438.1/173968-173868 4558:Sorghum
          bicolor (sorghum)
          Length = 101

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 60 gctccgctttttgattgagccgtgccaatatcacgt 95
          ||||| || |||||||||||||||||||||||||||
Sbjct: 58 gctccactctttgattgagccgtgccaatatcacgt 93




>RF00643;MIR171_1;AY551250.1/5-106 4530:Oryza sativa (rice)
          Length = 102

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 68 ttttgattgagccgtgccaatatcacgt 95
          ||||||||||||||||||||||||||||
Sbjct: 67 ttttgattgagccgtgccaatatcacgt 94




>RF00643;MIR171_1;AL606645.2/80760-80660 39947:Oryza sativa
          Japonica Group
          Length = 101

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 60 gctccgctttttgattgagccgtgccaatatcacgt 95
          ||||| || |||||||||||||||||||||||||||
Sbjct: 58 gctccactctttgattgagccgtgccaatatcacgt 93



 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 9  aacgggatattggtgcggttcaataagaaa 38
          |||||||||||||||||||||||| |||||
Sbjct: 6  aacgggatattggtgcggttcaatcagaaa 35




>RF00643;MIR171_1;ABIM01004247.1/37375-37272 3649:Carica papaya
          (papaya)
          Length = 104

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 69 tttgattgagccgtgccaatatcacgt 95
          |||||||||||||||||||||||||||
Sbjct: 70 tttgattgagccgtgccaatatcacgt 96




>RF00643;MIR171_1;AC212766.1/32177-32277 4081:Solanum lycopersicum
          Length = 101

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 66 ctttttgattgagccgtgccaatatcacgtg 96
          |||||||||||||||| ||||||||||||||
Sbjct: 64 ctttttgattgagccgcgccaatatcacgtg 94




>RF00643;MIR171_1;AM446221.1/52246-52149 29760:Vitis vinifera
          Length = 98

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 69 tttgattgagccgtgccaatatcacgt 95
          |||||||||||||||||||||||||||
Sbjct: 64 tttgattgagccgtgccaatatcacgt 90




>RF00643;MIR171_1;EU549150.1/415-315 3702:Arabidopsis thaliana
          (thale cress)
          Length = 101

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 69 tttgattgagccgtgccaatatcacg 94
          ||||||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatcacg 92




>RF00643;MIR171_1;AY728470.1/5-86 3694:Populus trichocarpa
          Length = 82

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 69 tttgattgagccgtgccaatatcac 93
          |||||||||||||||||||||||||
Sbjct: 58 tttgattgagccgtgccaatatcac 82




>RF00643;MIR171_1;AC219214.1/21177-21278 4081:Solanum lycopersicum
          Length = 102

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 69 tttgattgagccgtgccaatatcac 93
          |||||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatcac 92




>RF00643;MIR171_1;ABXC01004625.1/104342-104456 4558:Sorghum bicolor
           (sorghum)
          Length = 115

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 71  tgattgagccgtgccaatatcacgt 95
           |||||||||||||||||||||||||
Sbjct: 83  tgattgagccgtgccaatatcacgt 107




>RF00643;MIR171_1;ABXC01000089.1/209731-209588 4558:Sorghum bicolor
           (sorghum)
          Length = 144

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 69  tttgattgagccgtgccaatatcac 93
           |||||||||||||||||||||||||
Sbjct: 110 tttgattgagccgtgccaatatcac 134




>RF00643;MIR171_1;ABIM01002570.1/7961-8103 3649:Carica papaya
           (papaya)
          Length = 143

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 68  ttttgattgagccgtgccaatatc 91
           ||||||||||||||||||||||||
Sbjct: 108 ttttgattgagccgtgccaatatc 131




>RF00643;MIR171_1;AASG02019837.1/638-762 3988:Ricinus communis
           (castor bean)
          Length = 125

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 68  ttttgattgagccgtgccaatatc 91
           ||||||||||||||||||||||||
Sbjct: 90  ttttgattgagccgtgccaatatc 113




>RF00643;MIR171_1;BABK01005968.1/2486-2599 34305:Lotus japonicus
          Length = 114

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 68  ttttgattgagccgtgccaatatc 91
           ||||||||||||||||||||||||
Sbjct: 79  ttttgattgagccgtgccaatatc 102




>RF00643;MIR171_1;AP010316.1/5761-5862 34305:Lotus japonicus
          Length = 102

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 71 tgattgagccgtgccaatatcacgtgcc 98
          ||||||||||| ||||||||||||||||
Sbjct: 70 tgattgagccgcgccaatatcacgtgcc 97




>RF00643;MIR171_1;BT069726.1/119-252 4577:Zea mays
          Length = 134

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 70  ttgattgagccgtgccaatatcac 93
           ||||||||||||||||||||||||
Sbjct: 101 ttgattgagccgtgccaatatcac 124




>RF00643;MIR171_1;BT018211.1/119-253 4577:Zea mays
          Length = 135

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 70  ttgattgagccgtgccaatatcac 93
           ||||||||||||||||||||||||
Sbjct: 102 ttgattgagccgtgccaatatcac 125




>RF00643;MIR171_1;FM163807.1/196-297 3702:Arabidopsis thaliana
          (thale cress)
          Length = 102

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 72 gattgagccgtgccaatatcacg 94
          |||||||||||||||||||||||
Sbjct: 71 gattgagccgtgccaatatcacg 93




>RF00643;MIR171_1;AY728471.1/4-115 3694:Populus trichocarpa
          Length = 112

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 69  tttgattgagccgtgccaatatc 91
           |||||||||||||||||||||||
Sbjct: 88  tttgattgagccgtgccaatatc 110




>RF00643;MIR171_1;AY871043.1/2-86 3694:Populus trichocarpa
          Length = 85

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 71 tgattgagccgtgccaatatcac 93
          |||||||||||||||||||||||
Sbjct: 63 tgattgagccgtgccaatatcac 85




>RF00643;MIR171_1;AASG02000279.1/67999-67862 3988:Ricinus communis
           (castor bean)
          Length = 138

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 69  tttgattgagccgtgccaatatc 91
           |||||||||||||||||||||||
Sbjct: 104 tttgattgagccgtgccaatatc 126




>RF00643;MIR171_1;AC150705.17/109871-109755 3880:Medicago truncatula
           (barrel medic)
          Length = 117

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 69  tttgattgagccgtgccaatatc 91
           |||||||||||||||||||||||
Sbjct: 83  tttgattgagccgtgccaatatc 105




>RF00643;MIR171_1;CR962130.3/48254-48370 3880:Medicago truncatula
           (barrel medic)
          Length = 117

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 68  ttttgattgagccgtgccaatat 90
           |||||||||||||||||||||||
Sbjct: 82  ttttgattgagccgtgccaatat 104




>RF00643;MIR171_1;BABK01108397.1/266-409 34305:Lotus japonicus
          Length = 144

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 69  tttgattgagccgtgccaatatc 91
           |||||||||||||||||||||||
Sbjct: 110 tttgattgagccgtgccaatatc 132




>RF00643;MIR171_1;AC215407.2/42962-42863 4081:Solanum lycopersicum
          Length = 100

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 73 attgagccgtgccaatatcacgt 95
          |||||||||||||||||||||||
Sbjct: 70 attgagccgtgccaatatcacgt 92



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 9  aacgggatattggtgcggttcaataagaaa 38
          |||| ||||||||||||||||||| |||||
Sbjct: 6  aacgagatattggtgcggttcaattagaaa 35




>RF00643;MIR171_1;AC215372.2/27425-27538 4081:Solanum lycopersicum
          Length = 114

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 69  tttgattgagccgtgccaatatc 91
           |||||||||||||||||||||||
Sbjct: 80  tttgattgagccgtgccaatatc 102




>RF00643;MIR171_1;AM486682.2/2891-2758 29760:Vitis vinifera
          Length = 134

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 69  tttgattgagccgtgccaatatc 91
           |||||||||||||||||||||||
Sbjct: 100 tttgattgagccgtgccaatatc 122




>RF00643;MIR171_1;CAAP02019255.1/437-320 29760:Vitis vinifera
          Length = 118

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 69  tttgattgagccgtgccaatatc 91
           |||||||||||||||||||||||
Sbjct: 84  tttgattgagccgtgccaatatc 106




>RF00643;MIR171_1;AACV01007865.1/2509-2381 39947:Oryza sativa
           Japonica Group
          Length = 129

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 71  tgattgagccgtgccaatatcac 93
           |||||||||||||||||||||||
Sbjct: 97  tgattgagccgtgccaatatcac 119




>RF00643;MIR171_1;ABIM01014311.1/7039-6927 3649:Carica papaya
           (papaya)
          Length = 113

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 71  tgattgagccgtgccaatatca 92
           ||||||||||||||||||||||
Sbjct: 83  tgattgagccgtgccaatatca 104




>RF00643;MIR171_1;BABK01022931.1/1462-1563 34305:Lotus japonicus
          Length = 102

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 71 tgattgagccgtgccaatatca 92
          ||||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatatca 91




>RF00643;MIR171_1;CAAP02001068.1/13036-12938 29760:Vitis vinifera
          Length = 99

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 71 tgattgagccgtgccaatatca 92
          ||||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatca 88




>RF00643;MIR171_1;CAAP02002421.1/13383-13479 29760:Vitis vinifera
          Length = 97

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 71 tgattgagccgtgccaatatca 92
          ||||||||||||||||||||||
Sbjct: 65 tgattgagccgtgccaatatca 86