miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00720;mir-317;AAJJ01000475.1/38254-38168 7070:Tribolium
castaneum (red flour beetle)
Length = 87
Score = 153 bits (77), Expect = 4e-37
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 1 ggcggtgctggggaccaccctgtgtttactctgtatttcgaccagtgaacacagctggtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ggcggtgctggggaccaccctgtgtttactctgtatttcgaccagtgaacacagctggtg 65
Query: 61 gtatctcagtttcttcc 77
|||||||||||||||||
Sbjct: 66 gtatctcagtttcttcc 82
>RF00720;mir-317;ABLF01040770.1/5816-5924 7029:Acyrthosiphon pisum
(pea aphid)
Length = 109
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 44 agtgaacacagctggtggtatctcagtt 71
||||||||||||||||||||||||||||
Sbjct: 71 agtgaacacagctggtggtatctcagtt 98
>RF00720;mir-317;AADK01000441.1/12625-12537 7091:Bombyx mori
(domestic silkworm)
Length = 89
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 44 agtgaacacagctggtggtatctcagtt 71
||||||||||||||||||||||||||||
Sbjct: 51 agtgaacacagctggtggtatctcagtt 78
>RF00720;mir-317;AADG05001988.1/60488-60578 7460:Apis mellifera
(honey bee)
Length = 91
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 45 gtgaacacagctggtggtatctcagttt 72
||||||||||||||||||||||||||||
Sbjct: 54 gtgaacacagctggtggtatctcagttt 81
>RF00720;mir-317;AAZO01004205.1/873-973 121224:Pediculus humanus
corporis (human body louse)
Length = 101
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 44 agtgaacacagctggtggtatctcagtttct 74
|||||||||||||||||||||||||| ||||
Sbjct: 63 agtgaacacagctggtggtatctcagcttct 93
>RF00720;mir-317;AAGE02012640.1/88438-88525 7159:Aedes aegypti
(yellow fever mosquito)
Length = 88
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 agtgaacacagctggtggtatctcagt 70
|||||||||||||||||||||||||||
Sbjct: 50 agtgaacacagctggtggtatctcagt 76
>RF00720;mir-317;AAAB01008859.1/3281503-3281595 180454:Anopheles
gambiae str. PEST
Length = 93
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 agtgaacacagctggtggtatctcagt 70
|||||||||| ||||||||||||||||
Sbjct: 55 agtgaacacatctggtggtatctcagt 81
>RF00720;mir-317;AAIZ01005964.1/1594-1504 7234:Drosophila
persimilis
Length = 91
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 agtgaacacagctggtggtatc 65
||||||||||||||||||||||
Sbjct: 54 agtgaacacagctggtggtatc 75
>RF00720;mir-317;AAEU02000013.1/76417-76507 7245:Drosophila yakuba
Length = 91
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 agtgaacacagctggtggtatc 65
||||||||||||||||||||||
Sbjct: 54 agtgaacacagctggtggtatc 75
>RF00720;mir-317;AAPT01018372.1/102669-102760 7222:Drosophila
grimshawi
Length = 92
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 agtgaacacagctggtggtatc 65
||||||||||||||||||||||
Sbjct: 55 agtgaacacagctggtggtatc 76
>RF00720;mir-317;AANI01014607.1/383695-383607 7244:Drosophila
virilis
Length = 89
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 agtgaacacagctggtggtatc 65
||||||||||||||||||||||
Sbjct: 52 agtgaacacagctggtggtatc 73
>RF00720;mir-317;AAPU01011031.1/18314-18226 7230:Drosophila
mojavensis
Length = 89
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 agtgaacacagctggtggtatc 65
||||||||||||||||||||||
Sbjct: 52 agtgaacacagctggtggtatc 73
>RF00720;mir-317;ABJB010210559.1/10170-10082 6945:Ixodes
scapularis (black-legged tick)
Length = 89
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 45 gtgaacacagctggtggtatctcagt 70
|||||||||||||||||||| |||||
Sbjct: 52 gtgaacacagctggtggtatatcagt 77
