miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00950;mir-927;AAJJ01000142.1/38253-38326 7070:Tribolium
castaneum (red flour beetle)
Length = 74
Score = 135 bits (68), Expect = 7e-32
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 tttcggtttagaattcctacgctttaccgtgtgaaaggctggcaaagcgtttggattctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 tttcggtttagaattcctacgctttaccgtgtgaaaggctggcaaagcgtttggattctg 63
Query: 61 aatcgaac 68
||||||||
Sbjct: 64 aatcgaac 71
>RF00950;mir-927;AAGE02001795.1/170457-170536 7159:Aedes aegypti
(yellow fever mosquito)
Length = 80
Score = 56.0 bits (28), Expect = 6e-08
Identities = 57/67 (85%), Gaps = 6/67 (8%)
Strand = Plus / Plus
Query: 7 tttagaattcctacgctttaccgtg------tgaaaggctggcaaagcgtttggattctg 60
||||||||||||||||||||||||| |||||| ||||||||||||||| |||||
Sbjct: 10 tttagaattcctacgctttaccgtgatttgttgaaagtttggcaaagcgtttgggttctg 69
Query: 61 aatcgaa 67
|| ||||
Sbjct: 70 aaacgaa 76
>RF00950;mir-927;AABU01002771.1/5147485-5147408 7227:Drosophila
melanogaster (fruit fly)
Length = 78
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 tttagaattcctacgctttaccgtg 31
|||||||||||||||||||||||||
Sbjct: 10 tttagaattcctacgctttaccgtg 34
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 41 ggcaaagcgtttggattctgaa 62
||||||||||||||||||||||
Sbjct: 48 ggcaaagcgtttggattctgaa 69
>RF00950;mir-927;AAZO01006968.1/5753-5674 121224:Pediculus humanus
corporis (human body louse)
Length = 80
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 tttcggtttagaattcctacgctttacc 28
||||| ||||||||||||||||||||||
Sbjct: 4 tttcgatttagaattcctacgctttacc 31
>RF00950;mir-927;ABLF01004627.1/10448-10374 7029:Acyrthosiphon
pisum (pea aphid)
Length = 75
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tttagaattcctacgctttaccgt 30
||||||||||||||||||||||||
Sbjct: 10 tttagaattcctacgctttaccgt 33
>RF00950;mir-927;AADK01018362.1/2317-2241 7091:Bombyx mori
(domestic silkworm)
Length = 77
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tttagaattcctacgctttaccgt 30
||||||||||||||||||||||||
Sbjct: 10 tttagaattcctacgctttaccgt 33
>RF00950;mir-927;AAPP01018483.1/24548-24625 7217:Drosophila
ananassae
Length = 78
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tttagaattcctacgctttaccgt 30
||||||||||||||||||||||||
Sbjct: 10 tttagaattcctacgctttaccgt 33
>RF00950;mir-927;AAQB01006885.1/24835-24758 7260:Drosophila
willistoni
Length = 78
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tttagaattcctacgctttaccgt 30
||||||||||||||||||||||||
Sbjct: 10 tttagaattcctacgctttaccgt 33
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 41 ggcaaagcgtttggattctgaa 62
||||||||||||||||||||||
Sbjct: 48 ggcaaagcgtttggattctgaa 69
>RF00950;mir-927;AAIZ01011894.1/48584-48662 7234:Drosophila
persimilis
Length = 79
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tttagaattcctacgctttaccgt 30
||||||||||||||||||||||||
Sbjct: 10 tttagaattcctacgctttaccgt 33
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 41 ggcaaagcgtttggattctgaa 62
||||||||||||||||||||||
Sbjct: 49 ggcaaagcgtttggattctgaa 70
>RF00950;mir-927;AAPU01009479.1/6269-6192 7230:Drosophila
mojavensis
Length = 78
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tttagaattcctacgctttaccgt 30
||||||||||||||||||||||||
Sbjct: 10 tttagaattcctacgctttaccgt 33
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 tggcaaagcgtttggattctgaa 62
|||||||||||||||||||||||
Sbjct: 47 tggcaaagcgtttggattctgaa 69
>RF00950;mir-927;AAZX01009215.1/528-602 7425:Nasonia vitripennis
(jewel wasp)
Length = 75
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 tttagaattcctacgctttaccg 29
|||||||||||||||||||||||
Sbjct: 10 tttagaattcctacgctttaccg 32
>RF00950;mir-927;AADG05003208.1/18292-18365 7460:Apis mellifera
(honey bee)
Length = 74
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 tttagaattcctacgctttaccg 29
|||||||||||||||||||||||
Sbjct: 10 tttagaattcctacgctttaccg 32
>RF00950;mir-927;ABKP02022054.1/6557-6479 377271:Anopheles gambiae
M
Length = 79
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 ggcaaagcgtttggattctgaatcgaa 67
|||||||||||||||||||||| ||||
Sbjct: 49 ggcaaagcgtttggattctgaaacgaa 75
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tttagaattcctacgctttacc 28
||||||||||||||||||||||
Sbjct: 10 tttagaattcctacgctttacc 31
