miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01902;MIR439;AP005971.2/12591-12686 39947:Oryza sativa Japonica
Group
Length = 96
Score = 182 bits (92), Expect = 7e-46
Identities = 95/96 (98%)
Strand = Plus / Plus
Query: 11 acctaccctgtcgaactgacgcagttcgacatgtacctgtcgaactgtggttgttcgata 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acctaccctgtcgaactgacgcagttcgacatgtacctgtcgaactgtggttgttcgata 60
Query: 71 ggtatccctgtcgaaccgcggttgttcgacagggtg 106
| ||||||||||||||||||||||||||||||||||
Sbjct: 61 gatatccctgtcgaaccgcggttgttcgacagggtg 96
>RF01902;MIR439;AP005592.2/37149-37244 39947:Oryza sativa Japonica
Group
Length = 96
Score = 85.7 bits (43), Expect = 1e-16
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 13 ctaccctgtcgaactgacgcagttcgacatgtacctgtcgaactgtggttgttcgatagg 72
|||||||||||||||| | | |||||| | |||||| ||||||| |||||||||||||
Sbjct: 3 ctaccctgtcgaactgccacggttcgataggtacctatcgaactacagttgttcgatagg 62
Query: 73 tatccctgtcgaaccgcggttgttcgacagg 103
| |||||||||||| |||||||||||||||
Sbjct: 63 ttcccctgtcgaaccacggttgttcgacagg 93
>RF01902;MIR439;AACV01013301.1/21222-21323 39947:Oryza sativa
Japonica Group
Length = 102
Score = 81.8 bits (41), Expect = 2e-15
Identities = 85/100 (85%), Gaps = 6/100 (6%)
Strand = Plus / Plus
Query: 13 ctaccctgtcgaactgacgcagttcgacatgtacctgtcgaac------tgtggttgttc 66
||||||||||||||| | |||||||||||||||||||||||| ||| |||||||
Sbjct: 3 ctaccctgtcgaactaaaacagttcgacatgtacctgtcgaactgtagttgtagttgttc 62
Query: 67 gataggtatccctgtcgaaccgcggttgttcgacagggtg 106
|||||||| |||| |||||||| | |||||||| ||||||
Sbjct: 63 gataggtacccctatcgaaccgtgattgttcgatagggtg 102
>RF01902;MIR439;AAAA02034869.1/22769-22675 39946:Oryza sativa Indica
Group
Length = 95
Score = 77.8 bits (39), Expect = 3e-14
Identities = 80/91 (87%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 17 cctgtcgaactgacgcagttcgacatgtacc-tgtcgaactgtggttgttcgataggtat 75
||||||||||| |||||||||||| ||||| | |||||||||||||||||||||||||
Sbjct: 6 cctgtcgaactaccgcagttcgacaggtaccctatcgaactgtggttgttcgataggta- 64
Query: 76 ccctgtcgaaccgcggttgttcgacagggtg 106
|| ||||||||| ||||| ||| | ||||||
Sbjct: 65 ccttgtcgaaccacggttattcaatagggtg 95
>RF01902;MIR439;AP007227.2/134915-134819 39947:Oryza sativa Japonica
Group
Length = 97
Score = 71.9 bits (36), Expect = 2e-12
Identities = 79/92 (85%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 14 taccctgtcgaactgacgcagttcgacatgtacc-tgtcgaactgtggttgttcgatagg 72
||||||||||||| |||||||||||| ||||| | ||||| ||||||||||||||| |
Sbjct: 4 taccctgtcgaacaatcgcagttcgacaggtaccctatcgaattgtggttgttcgatatg 63
Query: 73 tatccctgtcgaaccgcggttgttcgacaggg 104
|| ||||||||||| || ||||||||||||
Sbjct: 64 tacccctgtcgaactatggatgttcgacaggg 95
>RF01902;MIR439;AP004585.2/135019-135084 39947:Oryza sativa Japonica
Group
Length = 66
Score = 65.9 bits (33), Expect = 1e-10
Identities = 52/57 (91%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 50 tcgaactgtggttgttcgataggtatccctgtcgaaccgcggttgttcgacagggtg 106
||||||||||||||||||||||||| || | ||||||| ||||||||||| ||||||
Sbjct: 11 tcgaactgtggttgttcgataggta-ccttatcgaaccacggttgttcgatagggtg 66
>RF01902;MIR439;AP008216.1/15295245-15295340 39947:Oryza sativa
Japonica Group
Length = 96
Score = 63.9 bits (32), Expect = 4e-10
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 43 gtacctgtcgaactgtggttgttcgataggtatccctgtcgaaccgcggttgttcgacag 102
||||||||||||| | ||||||||||||| |||||||||||| ||||| ||||||||
Sbjct: 33 gtacctgtcgaaccgcagttgttcgatagggtaccctgtcgaaccacggttattcgacag 92
Query: 103 ggtg 106
||||
Sbjct: 93 ggtg 96
>RF01902;MIR439;AACV01000024.1/3646-3582 39947:Oryza sativa
Japonica Group
Length = 65
Score = 63.9 bits (32), Expect = 4e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 33 agttcgacatgtacctgtcgaactgtggttgttcga 68
||||||||| ||||||||||||||||||||||||||
Sbjct: 23 agttcgacaggtacctgtcgaactgtggttgttcga 58
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 14 taccctgtcgaactgacgcagttcgacatgtacctgtcgaact 56
||||||||||||| | |||||||||| ||||||||||||||
Sbjct: 65 taccctgtcgaacaaccacagttcgacaggtacctgtcgaact 23
>RF01902;MIR439;AC231811.1/12186-12090 63629:Oryza minuta
Length = 97
Score = 60.0 bits (30), Expect = 7e-09
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 30 cgcagttcgacatgtacct-gtcgaactgtggttgttcgataggtatccctgtcgaac 86
|||||||||||| |||||| ||||||||| ||||||||||| ||| |||||||||||
Sbjct: 20 cgcagttcgacaggtaccttgtcgaactgcagttgttcgatatgtacccctgtcgaac 77
Score = 46.1 bits (23), Expect = 1e-04
Identities = 39/43 (90%), Gaps = 1/43 (2%)
Strand = Plus / Minus
Query: 31 gcagttcgacatg-tacctgtcgaactgtggttgttcgatagg 72
||||||||||| | |||||||||||||| | ||||||||||||
Sbjct: 49 gcagttcgacaaggtacctgtcgaactgcgattgttcgatagg 7
>RF01902;MIR439;AC232167.1/68654-68565 63629:Oryza minuta
Length = 90
Score = 58.0 bits (29), Expect = 3e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 43 gtacctgtcgaactgtggttgttcgataggtatccctgtcgaaccgcggttgttcga 99
||||||||||||||| |||||||||||| ||| ||||||| ||| ||||||||||
Sbjct: 27 gtacctgtcgaactgcggttgttcgatatgtacccctgtcaaactttggttgttcga 83
>RF01902;MIR439;AP002747.2/5763-5858 39947:Oryza sativa Japonica
Group
Length = 96
Score = 56.0 bits (28), Expect = 1e-07
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 46 cctgtcgaactgtggttgttcgataggtatccctgtcgaaccgcggttgttcgacagggt 105
|||||||||||| || |||||||||||| ||||||||||| | || ||||||||||||
Sbjct: 7 cctgtcgaactggggcagttcgataggtacccctgtcgaactggggcagttcgacagggt 66
>RF01902;MIR439;AP003522.3/153467-153562 39947:Oryza sativa
Japonica Group
Length = 96
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 31 gcagttcgacatgtacctgtcgaactg 57
|||||||||||||||||||||||||||
Sbjct: 48 gcagttcgacatgtacctgtcgaactg 22
Score = 52.0 bits (26), Expect = 2e-06
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 13 ctaccctgtcgaactgacgcagttcgacatgtacctgtcgaactgtggttgttcgatagg 72
||||||| ||||||| ||||||||||| |||| |||||||||| | |||||||| |
Sbjct: 3 ctaccctatcgaactatggcagttcgacaggtacatgtcgaactgccatagttcgataag 62
Query: 73 tatccctgtcgaaccgcggttgttcgacagggtg 106
|| | || |||| | ||||||||||||||||||
Sbjct: 63 tacctctatcgagacacggttgttcgacagggtg 96
>RF01902;MIR439;AAAA02022087.1/7691-7594 39946:Oryza sativa Indica
Group
Length = 98
Score = 52.0 bits (26), Expect = 2e-06
Identities = 64/74 (86%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 14 taccctgtcgaactgac-gcagttcgacatgtac-ctgtcgaactgtggttgttcgatag 71
|||||||| ||||| || ||||||||||| |||| |||||||| | |||||||||||||
Sbjct: 4 taccctgttgaactaaccgcagttcgacaagtactctgtcgaattatggttgttcgatat 63
Query: 72 gtatccctgtcgaa 85
||| |||| |||||
Sbjct: 64 gtacccctatcgaa 77
>RF01902;MIR439;AP004113.3/130209-130288 39947:Oryza sativa Japonica
Group
Length = 80
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 77 cctgtcgaaccgcggttgttcgacagggtg 106
||||||||||| ||||||||||||||||||
Sbjct: 51 cctgtcgaaccacggttgttcgacagggtg 80
>RF01902;MIR439;AC137611.3/143500-143402 39947:Oryza sativa Japonica
Group
Length = 99
Score = 52.0 bits (26), Expect = 2e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 56 tgtggttgttcgataggtatccctgtcgaaccgcggttgttcgacagggt 105
||||||||||||||| ||| |||||||||| | || |||||||||||||
Sbjct: 49 tgtggttgttcgatatgtacccctgtcgaattgtggatgttcgacagggt 98
>RF01902;MIR439;AP004233.3/71122-71027 39947:Oryza sativa Japonica
Group
Length = 96
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 16 ccctgtcgaactgacgcagttcgacatgtacctgtcgaac 55
||||||||||| | |||||||||||| ||||||||||||
Sbjct: 6 ccctgtcgaacgggtgcagttcgacatatacctgtcgaac 45
>RF01902;MIR439;AP006157.3/18829-18924 39947:Oryza sativa Japonica
Group
Length = 96
Score = 48.1 bits (24), Expect = 3e-05
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 46 cctgtcgaactgtggttgttcgataggtatccctgtcgaaccgcggttgttcgacagggt 105
|||||||||||| || |||||| ||||| ||||||||||| | || ||||||||||||
Sbjct: 93 cctgtcgaactggggcagttcgacaggtacccctgtcgaactggggcagttcgacagggt 34
Score = 46.1 bits (23), Expect = 1e-04
Identities = 41/46 (89%), Gaps = 2/46 (4%)
Strand = Plus / Plus
Query: 14 taccctgtcgaactgacgcagttcgaca--tgtacctgtcgaactg 57
||||||||||||||| | |||||||||| |||||||||||||||
Sbjct: 33 taccctgtcgaactgccccagttcgacaggggtacctgtcgaactg 78
>RF01902;MIR439;AAHY01163875.1/1287-1365 10090:Mus musculus (house
mouse)
Length = 79
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 76 ccctgtcgaaccgcggttgttcgacagggtg 106
|||||||||||| ||||||||| ||||||||
Sbjct: 49 ccctgtcgaaccacggttgttcaacagggtg 79
>RF01902;MIR439;AACV01005532.1/16609-16704 39947:Oryza sativa
Japonica Group
Length = 96
Score = 44.1 bits (22), Expect = 4e-04
Identities = 72/86 (83%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 19 tgtcgaactgacgcagttcgacatgtacc-tgtcgaactgtggttgttcgataggtatcc 77
|||||||||| | |||||||| | ||||| ||||||||| ||||||| |||||||| |
Sbjct: 9 tgtcgaactgtcccagttcgataggtaccctgtcgaactacggttgtttgataggta-ct 67
Query: 78 ctgtcgaaccgcggttgttcgacagg 103
|| ||||||| | | |||||||||||
Sbjct: 68 ctatcgaaccacagatgttcgacagg 93
>RF01902;MIR439;AP008210.1/20645862-20645766 39947:Oryza sativa
Japonica Group
Length = 97
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 47 ctgtcgaactgtggttgttcga 68
||||||||||||||||||||||
Sbjct: 32 ctgtcgaactgtggttgttcga 11
