miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;EU548832.1/235-380 3702:Arabidopsis thaliana
          (thale cress)
          Length = 146

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 20 tgaggggactgttgtctggctcga 43
          ||||||||||||||||||||||||
Sbjct: 3  tgaggggactgttgtctggctcga 26




>RF00075;mir-166;EU548853.1/145-266 3702:Arabidopsis thaliana
          (thale cress)
          Length = 122

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 20 tgaggggactgttgtctggctcga 43
          ||||||||||||||||||||||||
Sbjct: 3  tgaggggactgttgtctggctcga 26




>RF00075;mir-166;BABK01008352.1/1692-1590 34305:Lotus japonicus
          Length = 103

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 97  tcggaccaggcttcattcccttca 120
           ||||||||||||||||||||||||
Sbjct: 78  tcggaccaggcttcattcccttca 101




>RF00075;mir-166;EU945393.1/89-202 4577:Zea mays
          Length = 114

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 97  tcggaccaggcttcattcccttcaga 122
           |||||||||||||||||||| |||||
Sbjct: 89  tcggaccaggcttcattcccctcaga 114




>RF00075;mir-166;ABXC01000758.1/126828-126715 4558:Sorghum bicolor
           (sorghum)
          Length = 114

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 97  tcggaccaggcttcattcccttcaga 122
           |||||||||||||||||||| |||||
Sbjct: 89  tcggaccaggcttcattcccctcaga 114




>RF00075;mir-166;AAAA02025700.1/14722-14582 39946:Oryza sativa
           Indica Group
          Length = 141

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 97  tcggaccaggcttcattccctt 118
           ||||||||||||||||||||||
Sbjct: 116 tcggaccaggcttcattccctt 137




>RF00075;mir-166;AACV01018689.1/7378-7519 39947:Oryza sativa
           Japonica Group
          Length = 142

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 97  tcggaccaggcttcattccctt 118
           ||||||||||||||||||||||
Sbjct: 117 tcggaccaggcttcattccctt 138




>RF00075;mir-166;AAAA02030332.1/11899-12019 39946:Oryza sativa
           Indica Group
          Length = 121

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 97  tcggaccaggcttcattcccttcaga 122
           |||||||||||||||||||| |||||
Sbjct: 96  tcggaccaggcttcattcccctcaga 121