miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00725;mir-iab-4;AAJJ01001135.1/10616-10533 7070:Tribolium
castaneum (red flour beetle)
Length = 84
Score = 161 bits (81), Expect = 2e-39
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 1 ttaaaccccctgtacgtatactgaatgtatcctgagtgttttctgtccggtataccttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ttaaaccccctgtacgtatactgaatgtatcctgagtgttttctgtccggtataccttca 61
Query: 61 gtatacgtaacaggaggccac 81
|||||||||||||||||||||
Sbjct: 62 gtatacgtaacaggaggccac 82
>RF00725;mir-iab-4;AAPU01010953.1/219687-219770 7230:Drosophila
mojavensis
Length = 84
Score = 97.6 bits (49), Expect = 2e-20
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 13 tacgtatactgaatgtatcctgagtgttttctgtccggtataccttcagtatacgtaaca 72
||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||
Sbjct: 14 tacgtatactgaatgtatcctgagtgtatcctatccggtataccttcagtatacgtaaca 73
Query: 73 ggagg 77
||||
Sbjct: 74 cgagg 78
>RF00725;mir-iab-4;ABKP02025153.1/22654-22737 377271:Anopheles
gambiae M
Length = 84
Score = 81.8 bits (41), Expect = 1e-15
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 14 acgtatactgaatgtatcctgagtgttttctgtccggtataccttcagtatacgtaacag 73
||||||||||||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct: 15 acgtatactgaatgtatcctgagtgctacttatccggtataccttcagtatacgtaacaa 74
Query: 74 gaggc 78
|||||
Sbjct: 75 gaggc 79
>RF00725;mir-iab-4;AADK01004318.1/3463-3550 7091:Bombyx mori
(domestic silkworm)
Length = 88
Score = 77.8 bits (39), Expect = 2e-14
Identities = 61/68 (89%), Gaps = 4/68 (5%)
Strand = Plus / Plus
Query: 10 ctgtacgtatactgaatgtatcctgagtgt----tttctgtccggtataccttcagtata 65
||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 11 ctgtacgtatactgaatgtatcctgagtgcgcgattcttgtccggtataccttcagtata 70
Query: 66 cgtaacag 73
||||||||
Sbjct: 71 cgtaacag 78
>RF00725;mir-iab-4;ABLF01001794.1/37283-37372 7029:Acyrthosiphon
pisum (pea aphid)
Length = 90
Score = 75.8 bits (38), Expect = 7e-14
Identities = 64/73 (87%), Gaps = 6/73 (8%)
Strand = Plus / Plus
Query: 8 ccctgtacgtatactgaatgtatcctgagtgtttt------ctgtccggtataccttcag 61
||||||||||||||| ||||||||||||||| || |||||||||||||||||||
Sbjct: 9 ccctgtacgtatactaaatgtatcctgagtgcattataaaactgtccggtataccttcag 68
Query: 62 tatacgtaacagg 74
|||||||||||||
Sbjct: 69 tatacgtaacagg 81
>RF00725;mir-iab-4;ABJB010512107.1/48251-48167 6945:Ixodes
scapularis (black-legged tick)
Length = 85
Score = 67.9 bits (34), Expect = 2e-11
Identities = 53/58 (91%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 15 cgtatactgaatgtatcctgagtgttttctgt-ccggtataccttcagtatacgtaac 71
|||||||||| |||||||||||||||| | | |||||||||||||||||||||||||
Sbjct: 16 cgtatactgagtgtatcctgagtgtttaattttccggtataccttcagtatacgtaac 73
