miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00725;mir-iab-4;AAJJ01001135.1/10616-10533 7070:Tribolium
castaneum (red flour beetle)
Length = 84
Score = 167 bits (84), Expect = 3e-41
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 5 atgtggcctcctgttacgtatactgaaggtataccggacagaaaacactcaggatacatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 atgtggcctcctgttacgtatactgaaggtataccggacagaaaacactcaggatacatt 25
Query: 65 cagtatacgtacagggggtttaac 88
||||||||||||||||||||||||
Sbjct: 24 cagtatacgtacagggggtttaac 1
>RF00725;mir-iab-4;AAPU01010953.1/219687-219770 7230:Drosophila
mojavensis
Length = 84
Score = 97.6 bits (49), Expect = 2e-20
Identities = 61/65 (93%)
Strand = Plus / Minus
Query: 11 cctcctgttacgtatactgaaggtataccggacagaaaacactcaggatacattcagtat 70
|||| ||||||||||||||||||||||||||| || | ||||||||||||||||||||||
Sbjct: 78 cctcgtgttacgtatactgaaggtataccggataggatacactcaggatacattcagtat 19
Query: 71 acgta 75
|||||
Sbjct: 18 acgta 14
>RF00725;mir-iab-4;ABKP02025153.1/22654-22737 377271:Anopheles
gambiae M
Length = 84
Score = 81.8 bits (41), Expect = 1e-15
Identities = 59/65 (90%)
Strand = Plus / Minus
Query: 10 gcctcctgttacgtatactgaaggtataccggacagaaaacactcaggatacattcagta 69
||||| ||||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct: 79 gcctcttgttacgtatactgaaggtataccggataagtagcactcaggatacattcagta 20
Query: 70 tacgt 74
|||||
Sbjct: 19 tacgt 15
>RF00725;mir-iab-4;AADK01004318.1/3463-3550 7091:Bombyx mori
(domestic silkworm)
Length = 88
Score = 77.8 bits (39), Expect = 2e-14
Identities = 61/68 (89%), Gaps = 4/68 (5%)
Strand = Plus / Minus
Query: 15 ctgttacgtatactgaaggtataccggacagaaa----acactcaggatacattcagtat 70
|||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 78 ctgttacgtatactgaaggtataccggacaagaatcgcgcactcaggatacattcagtat 19
Query: 71 acgtacag 78
||||||||
Sbjct: 18 acgtacag 11
>RF00725;mir-iab-4;ABLF01001794.1/37283-37372 7029:Acyrthosiphon
pisum (pea aphid)
Length = 90
Score = 75.8 bits (38), Expect = 9e-14
Identities = 64/73 (87%), Gaps = 6/73 (8%)
Strand = Plus / Minus
Query: 14 cctgttacgtatactgaaggtataccggacag------aaaacactcaggatacattcag 67
|||||||||||||||||||||||||||||||| || ||||||||||||||| ||
Sbjct: 81 cctgttacgtatactgaaggtataccggacagttttataatgcactcaggatacatttag 22
Query: 68 tatacgtacaggg 80
|||||||||||||
Sbjct: 21 tatacgtacaggg 9
>RF00725;mir-iab-4;ABJB010512107.1/48251-48167 6945:Ixodes
scapularis (black-legged tick)
Length = 85
Score = 67.9 bits (34), Expect = 2e-11
Identities = 53/58 (91%), Gaps = 1/58 (1%)
Strand = Plus / Minus
Query: 17 gttacgtatactgaaggtataccgg-acagaaaacactcaggatacattcagtatacg 73
||||||||||||||||||||||||| | | |||||||||||||||| ||||||||||
Sbjct: 73 gttacgtatactgaaggtataccggaaaattaaacactcaggatacactcagtatacg 16
