miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00661;mir-31;AAQA01000036.1/3121-3003 6279:Brugia malayi
Length = 119
Score = 220 bits (111), Expect = 3e-57
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 5 gggacacgggacaaggcaagatgttggcatagctgaacatgataacgattaggctctagt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggacacgggacaaggcaagatgttggcatagctgaacatgataacgattaggctctagt 60
Query: 65 ttagagcctaatcaatttgcatagagcttcagcagtgccacattaggccat 115
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttagagcctaatcaatttgcatagagcttcagcagtgccacattaggccat 111
>RF00661;mir-31;ABLE02017251.1/2159-2248 281687:Caenorhabditis
japonica
Length = 90
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 18 aggcaagatgttggcatagctgaac 42
|||||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctgaac 38
>RF00661;mir-31;ABIR01000861.1/40343-40422 6334:Trichinella
spiralis
Length = 80
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 aggcaagatgttggcatagctgaa 41
||||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctgaa 37
>RF00661;mir-31;CABB01000792.1/858-747 6306:Meloidogyne incognita
(southern root-knot nematode)
Length = 112
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 14 gacaaggcaagatgttggcatagctgaa 41
||||||||||||||||||||| ||||||
Sbjct: 10 gacaaggcaagatgttggcattgctgaa 37
>RF00661;mir-31;CABB01006191.1/2062-2171 6306:Meloidogyne
incognita (southern root-knot nematode)
Length = 110
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 14 gacaaggcaagatgttggcatagctgaa 41
||||||||||||||||||||| ||||||
Sbjct: 10 gacaaggcaagatgttggcattgctgaa 37
>RF00661;mir-31;ABLG01000963.1/18977-19089 6305:Meloidogyne hapla
Length = 113
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 14 gacaaggcaagatgttggcatagctgaa 41
||||||||||||||||||||| ||||||
Sbjct: 10 gacaaggcaagatgttggcattgctgaa 37
>RF00661;mir-31;AF025464.1/2448-2533 6239:Caenorhabditis elegans
Length = 86
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 aggcaagatgttggcatagctgaa 41
||||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctgaa 37
>RF00661;mir-31;AAGD02002064.1/2567-2487 31234:Caenorhabditis
remanei
Length = 81
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 aggcaagatgttggcatagctgaa 41
||||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctgaa 37
>RF00661;mir-31;ABEG01018473.1/18882-18994 135651:Caenorhabditis
brenneri
Length = 113
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 aggcaagatgttggcatagctgaa 41
||||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctgaa 37
>RF00661;mir-31;ABLA01010404.1/255-389 51029:Heterodera glycines
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 gacaaggcaagatgttggcatagctga 40
||||||||||||||||||||| |||||
Sbjct: 10 gacaaggcaagatgttggcattgctga 36
>RF00661;mir-31;ABEG01018473.1/17089-17170 135651:Caenorhabditis
brenneri
Length = 82
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 ggcaagatgttggcatagctgaa 41
|||||||||||||||||||||||
Sbjct: 15 ggcaagatgttggcatagctgaa 37
>RF00661;mir-31;ABKE01002614.1/3132-3048 54126:Pristionchus
pacificus
Length = 85
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 aggcaagatgttggcatagctga 40
|||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctga 36
>RF00661;mir-31;AAGJ02119479.1/16120-16038 7668:Strongylocentrotus
purpuratus
Length = 83
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 aaggcaagatgttggcatagctg 39
|||||||||||||||||||||||
Sbjct: 13 aaggcaagatgttggcatagctg 35
>RF00661;mir-31;AAPN01033181.1/1752-1830 9258:Ornithorhynchus
anatinus (platypus)
Length = 79
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 aaggcaagatgttggcatagctg 39
|||||||||||||||||||||||
Sbjct: 13 aaggcaagatgttggcatagctg 35
>RF00661;mir-31;AAWZ01002824.1/52915-52993 28377:Anolis
carolinensis (green anole)
Length = 79
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 aggcaagatgttggcatagctga 40
|||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctga 36
>RF00661;mir-31;AANH01007167.1/95060-94981 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 80
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 aaggcaagatgttggcatagctg 39
|||||||||||||||||||||||
Sbjct: 13 aaggcaagatgttggcatagctg 35
>RF00661;mir-31;AC189661.2/146363-146285 9031:Gallus gallus
(chicken)
Length = 79
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 aggcaagatgttggcatagctg 39
||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctg 35
