miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AP003508.3/31246-31125 39947:Oryza sativa Japonica
Group
Length = 122
Score = 75.8 bits (38), Expect = 2e-13
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 88 tgtgtccagattcattataagaggatgtgttaaatcccgtacgagtttggtttattttag 147
||||||||||||||| || ||||||||| | |||||||||| | ||||||||||||||
Sbjct: 77 tgtgtccagattcatcgtactaggatgtgtcacatcccgtacggggttggtttattttag 18
Query: 148 gacagagggagtag 161
||| ||||||||||
Sbjct: 17 gacggagggagtag 4
Score = 60.0 bits (30), Expect = 1e-08
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 28 aaaataaaccaacctcataccggatgtgacatatcctagtgcgatgaatc 77
|||||||||||||| | ||| |||||||||| |||||||| |||||||||
Sbjct: 20 aaaataaaccaaccccgtacgggatgtgacacatcctagtacgatgaatc 69
Score = 54.0 bits (27), Expect = 6e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 13 tacttcctctatcccaaaataaaccaacctcataccggatgtg 55
|||| |||| ||||||||||||||||| |||||||| ||||||
Sbjct: 118 tactccctccatcccaaaataaaccaatctcataccagatgtg 76
>RF00906;MIR1122;AAAA02022195.1/27114-27226 39946:Oryza sativa
Indica Group
Length = 113
Score = 60.0 bits (30), Expect = 1e-08
Identities = 49/54 (90%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 24 tcccaaaataaaccaacctcataccggatgtgacatatcctagtgcgatgaatc 77
|||||||||||||||| ||| ||| |||||||||| |||||||| |||||||||
Sbjct: 98 tcccaaaataaaccaa-ctcgtacgggatgtgacacatcctagtacgatgaatc 46
Score = 56.0 bits (28), Expect = 2e-07
Identities = 47/52 (90%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 109 aggatgtgttaaatcccgtacgagtttggtttattttaggacagagggagta 160
||||||||| | |||||||||||||| |||||||||| |||| |||||||||
Sbjct: 59 aggatgtgtcacatcccgtacgagtt-ggtttattttgggacggagggagta 109
>RF00906;MIR1122;AAAA02003006.1/3399-3554 39946:Oryza sativa Indica
Group
Length = 156
Score = 60.0 bits (30), Expect = 1e-08
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 12 gtacttcctctatcccaaaataaaccaacctcataccggatgtgacatatccta 65
||||| ||||||||||| || |||||||||| |||||||||||||| ||||||
Sbjct: 153 gtactccctctatcccataaaaaaccaacctagtaccggatgtgacacatccta 100
>RF00906;MIR1122;AAAA02010090.1/14271-14425 39946:Oryza sativa
Indica Group
Length = 155
Score = 58.0 bits (29), Expect = 4e-08
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 9 cttgtacttcctctatcccaaaataaaccaacctcataccggatgtgacatatcctagtg 68
|||||||| |||| ||||| || |||||||||| ||||||||||||||| || |||||
Sbjct: 155 cttgtactccctccgtcccataaaaaaccaacctaataccggatgtgacacattctagta 96
Query: 69 cgatgaatc 77
| |||||||
Sbjct: 95 ctatgaatc 87
>RF00906;MIR1122;AAAA02018379.1/19319-19440 39946:Oryza sativa
Indica Group
Length = 122
Score = 52.0 bits (26), Expect = 3e-06
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 88 tgtgtccagattcattataagaggatgtgttaaatcccgtacgagtttggtttattttag 147
||||||| ||||||| || ||||||||| | |||||||||| | ||| ||||||||||
Sbjct: 77 tgtgtccgtattcattgtactaggatgtgtcacatcccgtacggggttgatttattttag 18
Query: 148 gacagagggagtag 161
||| ||||| ||||
Sbjct: 17 gacggagggggtag 4
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 24 tcccaaaataaaccaacctcataccggatgtg 55
|||||||||||||||| ||| |||||||||||
Sbjct: 107 tcccaaaataaaccaatctcgtaccggatgtg 76
Score = 48.1 bits (24), Expect = 4e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 121 atcccgtacgagtttggtttattttaggacagagggagta 160
|||| ||||||| |||||||||||| |||| |||||||||
Sbjct: 79 atccggtacgagattggtttattttgggacggagggagta 118
>RF00906;MIR1122;AC135208.3/104034-103893 39947:Oryza sativa
Japonica Group
Length = 142
Score = 52.0 bits (26), Expect = 3e-06
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 12 gtacttcctctatcccaaaataaaccaacctcataccggatgtgacatatccta 65
||||| ||||| ||||| || |||||||||| |||||||||||||| ||||||
Sbjct: 139 gtactccctctgtcccataaaaaaccaacctagtaccggatgtgacacatccta 86
Score = 46.1 bits (23), Expect = 2e-04
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 90 tgtccagattcattataagaggatgtgttaaatcccgtacgagtttggtttattttagga 149
||||||||||| | ||| ||||||||| | |||| |||| || ||||||| || | |||
Sbjct: 68 tgtccagattcgtagtaataggatgtgtcacatccggtactaggttggttttttatggga 127
Query: 150 cagagggagta 160
|||||||||||
Sbjct: 128 cagagggagta 138
>RF00906;MIR1122;AAAA02007860.1/10023-9886 39946:Oryza sativa Indica
Group
Length = 138
Score = 50.1 bits (25), Expect = 1e-05
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 24 tcccaaaataaaccaacctcataccggatgtgacatatcctagtgcgat 72
|||||||||||||||| ||| ||| ||||||| || |||||||| ||||
Sbjct: 123 tcccaaaataaaccaatctcgtactggatgtgccacatcctagtacgat 75
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 24 tcccaaaataaaccaacctcataccggatgtgacat 59
||||||||||||| |||| ||||| |||||||||||
Sbjct: 16 tcccaaaataaactaaccccatacgggatgtgacat 51
>RF00906;MIR1122;AAAA02004369.1/19477-19347 39946:Oryza sativa
Indica Group
Length = 131
Score = 48.1 bits (24), Expect = 4e-05
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 11 tgtacttcctctatcccaaaataaaccaacctcataccggatgtgacatatcctag 66
|||||| ||||||||||| || |||| ||||| ||| |||||||||||| |||||
Sbjct: 129 tgtactccctctatcccataaaaaacaaacctattacgggatgtgacataccctag 74
>RF00906;MIR1122;AAAA02031907.1/29073-28940 39946:Oryza sativa
Indica Group
Length = 134
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 46 accggatgtgacatatcctagtgcgatgaatc 77
|||||||||||||||| ||||| |||||||||
Sbjct: 38 accggatgtgacatattctagtacgatgaatc 69
>RF00906;MIR1122;AAAA02001246.1/17986-18106 39946:Oryza sativa
Indica Group
Length = 121
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 139 ttattttaggacagagggagtag 161
|||||||||||||||||||||||
Sbjct: 26 ttattttaggacagagggagtag 4
>RF00906;MIR1122;AAAA02003707.1/8900-8747 39946:Oryza sativa
Indica Group
Length = 154
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 46 accggatgtgacatatcctagtgcgatgaat 76
|||||||||||||||| ||||| ||||||||
Sbjct: 37 accggatgtgacatattctagtacgatgaat 67
>RF00906;MIR1122;AACV01010622.1/23023-23178 39947:Oryza sativa
Japonica Group
Length = 156
Score = 46.1 bits (23), Expect = 2e-04
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 24 tcccaaaataaaccaacctcataccggatgtgacatatcctag 66
||||| || ||| ||||||| |||||||||||||| |||||||
Sbjct: 141 tcccataaaaaatcaacctcgtaccggatgtgacacatcctag 99
>RF00906;MIR1122;AP008212.1/202637-202758 39947:Oryza sativa
Japonica Group
Length = 122
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 33 aaaccaacctcataccggatgtgacatatcctagt 67
|||||||||| |||||||||||||| ||||||||
Sbjct: 98 aaaccaacctagtaccggatgtgacacatcctagt 64
>RF00906;MIR1122;AAAA02027770.1/12261-12396 39946:Oryza sativa
Indica Group
Length = 136
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 33 aaaccaacctcataccggatgtgacatatcctagt 67
|||||||||| ||| |||||||||||||||||||
Sbjct: 112 aaaccaacctagtactggatgtgacatatcctagt 78
>RF00906;MIR1122;AACV01001981.1/7100-7193 39947:Oryza sativa
Japonica Group
Length = 94
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 126 gtacgagtttggtttattttaggacagagggagta 160
||||||| |||||||||||| |||| |||||||||
Sbjct: 39 gtacgaggttggtttattttgggacggagggagta 5
Score = 46.1 bits (23), Expect = 2e-04
Identities = 39/43 (90%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 24 tcccaaaataaaccaacctcatac-cggatgtgacatatccta 65
|||||||||||||||||||| ||| ||||||||||| |||||
Sbjct: 16 tcccaaaataaaccaacctcgtactaggatgtgacatgtccta 58
>RF00906;MIR1122;AAAA02035057.1/21564-21428 39946:Oryza sativa
Indica Group
Length = 137
Score = 44.1 bits (22), Expect = 6e-04
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 12 gtacttcctctatcccaaaataaaccaacctcataccggatgtgacatatccta 65
||||| |||| ||||||||||||| ||||||| || ||||||||| ||||||
Sbjct: 4 gtactccctccatcccaaaataaatcaacctcgtatgagatgtgacacatccta 57
>RF00906;MIR1122;AP008207.1/298223-298350 39947:Oryza sativa
Japonica Group
Length = 128
Score = 44.1 bits (22), Expect = 6e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 24 tcccaaaataaaccaacctcataccggatgtgacatatccta 65
||||| |||| | |||||| |||||||||||||||||||||
Sbjct: 113 tcccagaatatagcaacctagtaccggatgtgacatatccta 72
