miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00052;lin-4;U01837.1/538-607 31234:Caenorhabditis remanei
Length = 70
Score = 91.7 bits (46), Expect = 2e-18
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 10 gcctgttccctgagacctcaagtgtgagtgtactattgatgcttcacacctgggctctcc 69
||||| |||||||||||||||||||||| | ||| |||||||||||| |||||||||||
Sbjct: 1 gcctgctccctgagacctcaagtgtgagcgcactgttgatgcttcacgcctgggctctct 60
Query: 70 gggtaccagg 79
||||||||||
Sbjct: 61 gggtaccagg 70
>RF00052;lin-4;CAAC02000450.1/3217840-3217771 6238:Caenorhabditis
briggsae
Length = 70
Score = 83.8 bits (42), Expect = 4e-16
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 10 gcctgttccctgagacctcaagtgtgagtgtactattgatgcttcacacctgggctctcc 69
|||||||||||||||||||||||||||| || || ||||||||| ||||||||||||
Sbjct: 1 gcctgttccctgagacctcaagtgtgagcgttctgaacatgcttcacgcctgggctctcc 60
Query: 70 gggtaccagg 79
||||||||||
Sbjct: 61 gggtaccagg 70
>RF00052;lin-4;ABLE02009029.1/4231-4164 281687:Caenorhabditis
japonica
Length = 68
Score = 56.0 bits (28), Expect = 8e-08
Identities = 61/70 (87%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 11 cctgttccctgagacctcaagtgtgagtgtactat-tgatgcttcacacctgggctctcc 69
|||||||||||||||||||||||||| | ||| |||| |||||||||||||||||
Sbjct: 2 cctgttccctgagacctcaagtgtgaa---aatatctgatatctcacacctgggctctcc 58
Query: 70 gggtaccagg 79
||||||||||
Sbjct: 59 gggtaccagg 68
