miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00795;mir-43;Z70213.1/12528-12626 6239:Caenorhabditis elegans
Length = 99
Score = 194 bits (98), Expect = 1e-49
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1 tattggcactagtcgcccgtgacatcaagaaactagtgattatgccaaaccacagggaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tattggcactagtcgcccgtgacatcaagaaactagtgattatgccaaaccacagggaca 60
Query: 61 tatcacagtttacttgctgtcgcgggcggtgctgagtt 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tatcacagtttacttgctgtcgcgggcggtgctgagtt 98
>RF00795;mir-43;CAAC02000450.1/2292316-2292219 6238:Caenorhabditis
briggsae
Length = 98
Score = 69.9 bits (35), Expect = 6e-12
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 15 gcccgtgacatcaagaaactagtgattatgccaaaccacagggacatatcacagtttact 74
|||||||||||||||| || |||||||||| ||| ||||||||||||||||||||
Sbjct: 14 gcccgtgacatcaagatgcttgtgattatgcgaaaatgttgggacatatcacagtttact 73
Query: 75 tgctgtcgcgggcgg 89
||||||||| |||||
Sbjct: 74 tgctgtcgcaggcgg 88
>RF00795;mir-43;AAGD02000348.1/78685-78788 31234:Caenorhabditis
remanei
Length = 104
Score = 67.9 bits (34), Expect = 2e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 54 agggacatatcacagtttacttgctgtcgcgggcggtg 91
|||||||||||||||||||||||||||||| |||||||
Sbjct: 60 agggacatatcacagtttacttgctgtcgcaggcggtg 97
>RF00795;mir-43;ABLE02021980.1/2423-2327 281687:Caenorhabditis
japonica
Length = 97
Score = 56.0 bits (28), Expect = 9e-08
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 41 tatgccaaaccacagggacatatcacagtttacttgctgtcgcgggcg 88
||||||||| || ||| ||||||||||||||||||||||| ||||||
Sbjct: 42 tatgccaaatcagtgggtcatatcacagtttacttgctgtcccgggcg 89
>RF00795;mir-43;ABEG01018919.1/5966-5860 135651:Caenorhabditis
brenneri
Length = 107
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 57 gacatatcacagtttacttgctgtcgc 83
|||||||||||||||||||||||||||
Sbjct: 65 gacatatcacagtttacttgctgtcgc 91
