miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00710;mir-44;Z70213.1/12643-12735 6239:Caenorhabditis elegans
Length = 93
Score = 184 bits (93), Expect = 1e-46
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 3 gaaaatggccaatctggatgtgctcgttggtcatagacgtcaacacgaactgttcatatg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaaaatggccaatctggatgtgctcgttggtcatagacgtcaacacgaactgttcatatg 60
Query: 63 actagagacacattcagcttggcctgcttctct 95
|||||||||||||||||||||||||||||||||
Sbjct: 61 actagagacacattcagcttggcctgcttctct 93
>RF00710;mir-44;AAGD02000348.1/78845-78938 31234:Caenorhabditis
remanei
Length = 94
Score = 67.9 bits (34), Expect = 2e-11
Identities = 74/85 (87%), Gaps = 3/85 (3%)
Strand = Plus / Plus
Query: 6 aatggccaatctggatgtgctcgttggtcatagacg--tcaacacgaactgttcatatga 63
||||||| ||||||||||||||||| |||||||||| ||| ||| || |||||||
Sbjct: 4 aatggccgatctggatgtgctcgttagtcatagacgaatcacagaaaacagt-catatga 62
Query: 64 ctagagacacattcagcttggcctg 88
|||||||||||||||||||||||||
Sbjct: 63 ctagagacacattcagcttggcctg 87
>RF00710;mir-44;ABLE02021982.1/2149-2242 281687:Caenorhabditis
japonica
Length = 94
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 57 catatgactagagacacattcagcttggc 85
|||||||||||||||||||||||||||||
Sbjct: 56 catatgactagagacacattcagcttggc 84
>RF00710;mir-44;ABEG01005634.1/1647-1738 135651:Caenorhabditis
brenneri
Length = 92
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 tatgactagagacacattcagcttggc 85
|||||||||||||||||||||||||||
Sbjct: 56 tatgactagagacacattcagcttggc 82
>RF00710;mir-44;Z70213.1/3656-3563 6239:Caenorhabditis elegans
Length = 94
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 tatgactagagacacattcagcttggc 85
|||||||||||||||||||||||||||
Sbjct: 58 tatgactagagacacattcagcttggc 84
>RF00710;mir-44;CAAC02000450.1/2301452-2301360 6238:Caenorhabditis
briggsae
Length = 93
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 tatgactagagacacattcagcttggc 85
|||||||||||||||||||||||||||
Sbjct: 57 tatgactagagacacattcagcttggc 83
>RF00710;mir-44;ABLE02021980.1/2278-2189 281687:Caenorhabditis
japonica
Length = 90
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 tatgactagagacacattcagcttggc 85
|||||||||||||||||||||||||||
Sbjct: 54 tatgactagagacacattcagcttggc 80
>RF00710;mir-44;ABKE01001765.1/17946-17852 54126:Pristionchus
pacificus
Length = 95
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 59 tatgactagagacacattcagcttgg 84
||||||||||||||||||||||||||
Sbjct: 58 tatgactagagacacattcagcttgg 83
