miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00710;mir-44;Z70213.1/3656-3563 6239:Caenorhabditis elegans
Length = 94
Score = 186 bits (94), Expect = 3e-47
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 2 accatgtgccacgctggatgtgctcgttagtcataatatcctccacaaagcaaggactat 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 accatgtgccacgctggatgtgctcgttagtcataatatcctccacaaagcaaggactat 60
Query: 62 gactagagacacattcagcttggcgccgaatgca 95
||||||||||||||||||||||||||||||||||
Sbjct: 61 gactagagacacattcagcttggcgccgaatgca 94
>RF00710;mir-44;CAAC02000450.1/2301452-2301360 6238:Caenorhabditis
briggsae
Length = 93
Score = 83.8 bits (42), Expect = 4e-16
Identities = 73/82 (89%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 7 gtgccacgctggatgtgctcgttagtcataatatcctccacaaagcaaggactatgacta 66
|||||||||||||||||||||||||||||| || |||| ||| | ||| ||||||||
Sbjct: 6 gtgccacgctggatgtgctcgttagtcatagtaacctcatcaattc-aggcttatgacta 64
Query: 67 gagacacattcagcttggcgcc 88
||||||||||||||||||||||
Sbjct: 65 gagacacattcagcttggcgcc 86
>RF00710;mir-44;ABEG01005634.1/1647-1738 135651:Caenorhabditis
brenneri
Length = 92
Score = 63.9 bits (32), Expect = 3e-10
Identities = 71/83 (85%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 8 tgccacgctggatgtgctcgttagtcataatatcctccacaaagcaaggactatgactag 67
||||||||||||||||||||||||||||| || ||| | | | || ||||||||||
Sbjct: 7 tgccacgctggatgtgctcgttagtcatagtaacct--atcctgaacggcctatgactag 64
Query: 68 agacacattcagcttggcgccga 90
|||||||||||||||||| ||||
Sbjct: 65 agacacattcagcttggctccga 87
>RF00710;mir-44;ABLE02021982.1/2149-2242 281687:Caenorhabditis
japonica
Length = 94
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 tatgactagagacacattcagcttggc 85
|||||||||||||||||||||||||||
Sbjct: 58 tatgactagagacacattcagcttggc 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 8 tgccacgctggatgtgctcgttagtcataa 37
|||||||||| |||||||||||||||||||
Sbjct: 7 tgccacgctgaatgtgctcgttagtcataa 36
>RF00710;mir-44;AAGD02000348.1/78845-78938 31234:Caenorhabditis
remanei
Length = 94
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 tatgactagagacacattcagcttggc 85
|||||||||||||||||||||||||||
Sbjct: 58 tatgactagagacacattcagcttggc 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 ctggatgtgctcgttagtcata 36
||||||||||||||||||||||
Sbjct: 14 ctggatgtgctcgttagtcata 35
>RF00710;mir-44;ABLE02021980.1/2278-2189 281687:Caenorhabditis
japonica
Length = 90
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 tatgactagagacacattcagcttggc 85
|||||||||||||||||||||||||||
Sbjct: 54 tatgactagagacacattcagcttggc 80
>RF00710;mir-44;Z70213.1/12643-12735 6239:Caenorhabditis elegans
Length = 93
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 tatgactagagacacattcagcttggc 85
|||||||||||||||||||||||||||
Sbjct: 57 tatgactagagacacattcagcttggc 83
>RF00710;mir-44;ABKE01001765.1/17946-17852 54126:Pristionchus
pacificus
Length = 95
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 59 tatgactagagacacattcagcttggcgccg 89
|||||||||||||||||||||||||| ||||
Sbjct: 58 tatgactagagacacattcagcttggggccg 88
