miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00824;mir-50;AC025726.2/98206-98306 6239:Caenorhabditis elegans
Length = 101
Score = 196 bits (99), Expect = 4e-50
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 1 ctgcccgccggccgctgatatgtctggtattcttgggtttgaacttccagcgttgaaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ctgcccgccggccgctgatatgtctggtattcttgggtttgaacttccagcgttgaaccc 62
Query: 61 gcatattagacgtatcgacggccggcggggcaggtaatg 99
|||||||||||||||||||||||||||||||||||||||
Sbjct: 63 gcatattagacgtatcgacggccggcggggcaggtaatg 101
>RF00824;mir-50;ABEG01020864.1/20176-20077 135651:Caenorhabditis
brenneri
Length = 100
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 8 ccggccgctgatatgtctggtattcttgggtt 39
||||||||||||||||||||||||||||||||
Sbjct: 10 ccggccgctgatatgtctggtattcttgggtt 41
>RF00824;mir-50;AAGD02001051.1/27617-27516 31234:Caenorhabditis
remanei
Length = 102
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 10 ggccgctgatatgtctggtattcttgggtt 39
||||||||||||||||||||||||||||||
Sbjct: 12 ggccgctgatatgtctggtattcttgggtt 41
>RF00824;mir-50;CAAC02000589.1/893157-893260 6238:Caenorhabditis
briggsae
Length = 104
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 8 ccggccgctgatatgtctggtattcttgggtt 39
||||||||||||||||||| ||||||||||||
Sbjct: 10 ccggccgctgatatgtctgatattcttgggtt 41
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tattagacgtatcgacggccggc 86
|||||||||||||||||||||||
Sbjct: 69 tattagacgtatcgacggccggc 91
