miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;Z68760.3/2906-2832 6239:Caenorhabditis elegans
Length = 75
Score = 149 bits (75), Expect = 8e-36
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 10 gtccgtctacccgtagctcctatccatgttactggtcaaaaagtgaacatggaagcaggt 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtccgtctacccgtagctcctatccatgttactggtcaaaaagtgaacatggaagcaggt 60
Query: 70 acaggtgcacggcga 84
|||||||||||||||
Sbjct: 61 acaggtgcacggcga 75
>RF00104;mir-10;AAGD02004811.1/1242-1317 31234:Caenorhabditis
remanei
Length = 76
Score = 67.9 bits (34), Expect = 2e-11
Identities = 65/74 (87%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 10 gtccgtctacccgtagctcctatccatgttact-ggtcaaaaagtgaacatggaagcagg 68
||||||||||||||||||||||||||||||||| | | | |||||||||||||| ||
Sbjct: 1 gtccgtctacccgtagctcctatccatgttactagcagatagagtgaacatggaagttgg 60
Query: 69 tacaggtgcacggc 82
|||||||| |||||
Sbjct: 61 tacaggtgtacggc 74
>RF00104;mir-10;CAAC02000470.1/1065550-1065622 6238:Caenorhabditis
briggsae
Length = 73
Score = 63.9 bits (32), Expect = 4e-10
Identities = 50/55 (90%), Gaps = 2/55 (3%)
Strand = Plus / Plus
Query: 10 gtccgtctacccgtagctcctatccatgttactggtcaaaaagtgaacatggaag 64
|||| |||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 1 gtccatctacccgtagctccttgccatgttactggt--aaaagtgaacatggaag 53
>RF00104;mir-10;ABLE02003970.1/13-91 281687:Caenorhabditis
japonica
Length = 79
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 12 ccgtctacccgtagctcctatccatgtt 39
||||||||||||||||||||||||||||
Sbjct: 3 ccgtctacccgtagctcctatccatgtt 30
>RF00104;mir-10;ABEG01009306.1/18046-17972 135651:Caenorhabditis
brenneri
Length = 75
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 12 ccgtctacccgtagctcctatccatgtt 39
||||||||||||||||||||||||||||
Sbjct: 3 ccgtctacccgtagctcctatccatgtt 30
