miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00734;mir-52;AL023835.1/60854-60953 6239:Caenorhabditis elegans
Length = 100
Score = 198 bits (100), Expect = 9e-51
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 tccaactctaacagtccacccgtacatatgtttccgtgcttgacagcgaagctcaatcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccaactctaacagtccacccgtacatatgtttccgtgcttgacagcgaagctcaatcac 60
Query: 61 gttacaatgaaagggtagccggttattgaagttgggtctt 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gttacaatgaaagggtagccggttattgaagttgggtctt 100
>RF00734;mir-52;CAAC02000470.1/1061940-1062037 6238:Caenorhabditis
briggsae
Length = 98
Score = 91.7 bits (46), Expect = 2e-18
Identities = 71/78 (91%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 6 ctctaacagtccacccgtacatatgtttccgtgcttgacagcgaagctcaatcacgttac 65
|||| ||||||||||||||||||||||||||||||||||| | |||||||||||| |||
Sbjct: 6 ctctgacagtccacccgtacatatgtttccgtgcttgacatag-agctcaatcacgatac 64
Query: 66 aatgaaagggtagccggt 83
||||| |||||||||||
Sbjct: 65 aatgagcgggtagccggt 82
>RF00734;mir-52;ABEG01011618.1/15024-14927 135651:Caenorhabditis
brenneri
Length = 98
Score = 71.9 bits (36), Expect = 1e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 6 ctctaacagtccacccgtacatatgtttccgtgcttgaca 45
|||| |||||||||||||||||||||||||||||||||||
Sbjct: 6 ctctgacagtccacccgtacatatgtttccgtgcttgaca 45
>RF00734;mir-52;AAGD02004810.1/56-151 31234:Caenorhabditis remanei
Length = 96
Score = 69.9 bits (35), Expect = 6e-12
Identities = 51/55 (92%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 14 gtccacccgtacatatgtttccgtgcttgacagcgaagctcaatcacgttacaat 68
|||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 14 gtccacccgtacatatgtttccgtgcttgacattg-tgctcaatcacgttacaat 67
>RF00734;mir-52;Z68760.3/4495-4396 6239:Caenorhabditis elegans
Length = 100
Score = 69.9 bits (35), Expect = 6e-12
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 11 acagtccacccgtacatatgtttccgtgcttgacagcgaagctcaatcacg 61
||||||||||||||||| |||||||||||||||| | |||||||||||||
Sbjct: 11 acagtccacccgtacatttgtttccgtgcttgacttcaaagctcaatcacg 61
