miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00734;mir-52;Z68760.3/4495-4396 6239:Caenorhabditis elegans
Length = 100
Score = 196 bits (99), Expect = 4e-50
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 1 ccgattctgacagtccacccgtacatttgtttccgtgcttgacttcaaagctcaatcacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ccgattctgacagtccacccgtacatttgtttccgtgcttgacttcaaagctcaatcacg 61
Query: 61 gcacaatatatgggtcgccagtcattgtagtcggaattt 99
|||||||||||||||||||||||||||||||||||||||
Sbjct: 62 gcacaatatatgggtcgccagtcattgtagtcggaattt 100
>RF00734;mir-52;ABEG01011618.1/15024-14927 135651:Caenorhabditis
brenneri
Length = 98
Score = 77.8 bits (39), Expect = 2e-14
Identities = 74/84 (88%), Gaps = 5/84 (5%)
Strand = Plus / Plus
Query: 6 tctgacagtccacccgtacatttgtttccgtgcttgacttcaa--agctcaatcacggca 63
||||||||||||||||||||| ||||||||||||||| ||| || ||||||||| ||
Sbjct: 7 tctgacagtccacccgtacatatgtttccgtgcttga---caatgagttcaatcacgtca 63
Query: 64 caatatatgggtcgccagtcattg 87
|||| ||||||||||| |||||||
Sbjct: 64 caatttatgggtcgccggtcattg 87
>RF00734;mir-52;AL023835.1/60854-60953 6239:Caenorhabditis elegans
Length = 100
Score = 69.9 bits (35), Expect = 6e-12
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 10 acagtccacccgtacatttgtttccgtgcttgacttcaaagctcaatcacg 60
||||||||||||||||| |||||||||||||||| | |||||||||||||
Sbjct: 11 acagtccacccgtacatatgtttccgtgcttgacagcgaagctcaatcacg 61
>RF00734;mir-52;CAAC02000470.1/1061940-1062037 6238:Caenorhabditis
briggsae
Length = 98
Score = 69.9 bits (35), Expect = 6e-12
Identities = 51/55 (92%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 6 tctgacagtccacccgtacatttgtttccgtgcttgacttcaaagctcaatcacg 60
||||||||||||||||||||| |||||||||||||||| | | ||||||||||||
Sbjct: 7 tctgacagtccacccgtacatatgtttccgtgcttgacat-agagctcaatcacg 60
>RF00734;mir-52;AAGD02004810.1/56-151 31234:Caenorhabditis remanei
Length = 96
Score = 61.9 bits (31), Expect = 1e-09
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 13 gtccacccgtacatttgtttccgtgcttgacttcaaagctcaatcacggcacaatatatg 72
|||||||||||||| |||||||||||||||| | ||||||||||| ||||||||||
Sbjct: 14 gtccacccgtacatatgtttccgtgcttgacat-tgtgctcaatcacgttacaatatatg 72
Query: 73 ggtcgcc 79
|||||||
Sbjct: 73 ggtcgcc 79
