miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00826;mir-55;Z69788.1/18474-18378 6239:Caenorhabditis elegans
Length = 97
Score = 192 bits (97), Expect = 6e-49
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 agatttggaacttaatgggactcggcagaaacctatcggttatactttttggatatgcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agatttggaacttaatgggactcggcagaaacctatcggttatactttttggatatgcta 60
Query: 61 tacccgtataagtttctgctgagccccttattcctgt 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 tacccgtataagtttctgctgagccccttattcctgt 97
>RF00826;mir-55;ABLE02010923.1/1109-1010 281687:Caenorhabditis
japonica
Length = 100
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 59 tatacccgtataagtttctgctgagcccc 87
|||||||||||||||||| ||||||||||
Sbjct: 62 tatacccgtataagtttccgctgagcccc 90
>RF00826;mir-55;AAGD02007434.1/173562-173660 31234:Caenorhabditis
remanei
Length = 99
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 58 ctatacccgtataagtttctgctgagcccct 88
|||||||||||| |||||||||||||||||
Sbjct: 60 ctatacccgtatttgtttctgctgagcccct 90
