miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;Z36753.1/18689-18616 6239:Caenorhabditis elegans
Length = 74
Score = 147 bits (74), Expect = 3e-35
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 9 gctcgtctaccctgtagatcgagctgtgtgtttgaaacaatcatacacgagctagactac 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctcgtctaccctgtagatcgagctgtgtgtttgaaacaatcatacacgagctagactac 60
Query: 69 aaggtgcacgaaca 82
||||||||||||||
Sbjct: 61 aaggtgcacgaaca 74
>RF00104;mir-10;CAAC02000450.1/11231-11158 6238:Caenorhabditis
briggsae
Length = 74
Score = 81.8 bits (41), Expect = 2e-15
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 11 tcgtctaccctgtagatcgagctgtgtgtttgaaacaatcatacacgagctagactacaa 70
|||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
Sbjct: 3 tcgtctaccctgtagatcgagctgtgtgttctgaagtatcatacacgagctagactacta 62
Query: 71 ggtgcacga 79
|||| ||||
Sbjct: 63 ggtgaacga 71
>RF00104;mir-10;AAGD02001072.1/97510-97436 31234:Caenorhabditis
remanei
Length = 75
Score = 67.9 bits (34), Expect = 2e-11
Identities = 62/70 (88%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 11 tcgtctaccctgtagatcgagctgtgtg-tttgaaacaatcatacacgagctagactaca 69
|||||||||||||||||||||||||||| |||||| |||||||| ||||||||| ||
Sbjct: 3 tcgtctaccctgtagatcgagctgtgtgttttgaagtgttcatacacaagctagactgca 62
Query: 70 aggtgcacga 79
||||| ||||
Sbjct: 63 aggtgaacga 72
>RF00104;mir-10;ABEG01006274.1/3492-3418 135651:Caenorhabditis
brenneri
Length = 75
Score = 67.9 bits (34), Expect = 2e-11
Identities = 62/70 (88%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 11 tcgtctaccctgtagatcgagctgtgtgtttgaaaca-atcatacacgagctagactaca 69
||||||||||||||||| |||||||||||||| || | | | ||||| ||||||||||||
Sbjct: 3 tcgtctaccctgtagatagagctgtgtgtttggaatataccgtacacaagctagactaca 62
Query: 70 aggtgcacga 79
||||| ||||
Sbjct: 63 aggtgaacga 72
>RF00104;mir-10;ABLE02004203.1/1142-1061 281687:Caenorhabditis
japonica
Length = 82
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 11 tcgtctaccctgtagatcgagctgtgtgt 39
|||||||||||||||||||||||||||||
Sbjct: 3 tcgtctaccctgtagatcgagctgtgtgt 31
