miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00835;mir-58;AC024848.1/16188-16284 6239:Caenorhabditis elegans
Length = 97
Score = 192 bits (97), Expect = 6e-49
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 gctcgtcatatccattgccctactcttcgcatctcatcacttcgtccaataccataggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctcgtcatatccattgccctactcttcgcatctcatcacttcgtccaataccataggga 60
Query: 61 tgagatcgttcagtacggcaatggactgagctagagt 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgagatcgttcagtacggcaatggactgagctagagt 97
>RF00835;mir-58;ABEG01002137.1/7752-7656 135651:Caenorhabditis
brenneri
Length = 97
Score = 121 bits (61), Expect = 2e-27
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 1 gctcgtcatatccattgccctactcttcgcatctcatcacttcgtccaataccataggga 60
||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||
Sbjct: 1 gctcgtcatatccattgccctactcttcgcatctcatcacttcgtccgccaatataagga 60
Query: 61 tgagatcgttcagtacggcaatgga 85
|||||||||||||||||||||||||
Sbjct: 61 tgagatcgttcagtacggcaatgga 85
>RF00835;mir-58;CAAC02000451.1/314460-314357 6238:Caenorhabditis
briggsae
Length = 104
Score = 65.9 bits (33), Expect = 9e-11
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 1 gctcgtcatatccattgccctactcttcgcatctcatcact 41
||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 1 gctcgccatatccattgccctactattcgcatctcatcact 41
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 58 ggatgagatcgttcagtacggcaatgga 85
||||||||||||||||||||||||||||
Sbjct: 65 ggatgagatcgttcagtacggcaatgga 92
>RF00835;mir-58;ABLE02019268.1/186-280 281687:Caenorhabditis
japonica
Length = 95
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 gatgagatcgttcagtacggcaatgga 85
|||||||||||||||||||||||||||
Sbjct: 57 gatgagatcgttcagtacggcaatgga 83
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 10 atccattgccctactcttcgcatctcatca 39
|||||| |||||||||||||||||||||||
Sbjct: 8 atccatcgccctactcttcgcatctcatca 37
