miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00661;mir-31;AF025464.1/2448-2533 6239:Caenorhabditis elegans
Length = 86
Score = 170 bits (86), Expect = 2e-42
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 4 tcccgtcagagctaggcaagatgttggcatagctgaatgatcgctataacaactatcagc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcccgtcagagctaggcaagatgttggcatagctgaatgatcgctataacaactatcagc 60
Query: 64 ttcgccacattctgccacgcactgat 89
||||||||||||||||||||||||||
Sbjct: 61 ttcgccacattctgccacgcactgat 86
>RF00661;mir-31;ABLE02017251.1/2159-2248 281687:Caenorhabditis
japonica
Length = 90
Score = 71.9 bits (36), Expect = 1e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 5 cccgtcagagctaggcaagatgttggcatagctgaa 40
||||||||||||||||||||||||||||||||||||
Sbjct: 2 cccgtcagagctaggcaagatgttggcatagctgaa 37
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 tatcagcttcgccacattctgcca 80
||||||||||||||||||||||||
Sbjct: 58 tatcagcttcgccacattctgcca 81
>RF00661;mir-31;ABEG01018473.1/18882-18994 135651:Caenorhabditis
brenneri
Length = 113
Score = 65.9 bits (33), Expect = 9e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 11 agagctaggcaagatgttggcatagctgaatga 43
|||||||||||||||||||||||||||||||||
Sbjct: 8 agagctaggcaagatgttggcatagctgaatga 40
>RF00661;mir-31;AAGD02002064.1/2567-2487 31234:Caenorhabditis
remanei
Length = 81
Score = 63.9 bits (32), Expect = 4e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 7 cgtcagagctaggcaagatgttggcatagctgaatg 42
||||| ||||||||||||||||||||||||||||||
Sbjct: 4 cgtcaaagctaggcaagatgttggcatagctgaatg 39
>RF00661;mir-31;ABIR01000861.1/40343-40422 6334:Trichinella
spiralis
Length = 80
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 16 taggcaagatgttggcatagctgaatg 42
|||||||||||||||||||||||||||
Sbjct: 13 taggcaagatgttggcatagctgaatg 39
>RF00661;mir-31;AAQA01000036.1/3121-3003 6279:Brugia malayi
Length = 119
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 aggcaagatgttggcatagctgaa 40
||||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctgaa 37
>RF00661;mir-31;CAAC02000581.1/2826-2716 6238:Caenorhabditis
briggsae
Length = 111
Score = 46.1 bits (23), Expect = 8e-05
Identities = 30/31 (96%), Gaps = 1/31 (3%)
Strand = Plus / Plus
Query: 12 gagctaggcaagatgttggcatagctgaatg 42
|||||||||| ||||||||||||||||||||
Sbjct: 9 gagctaggca-gatgttggcatagctgaatg 38
>RF00661;mir-31;ABEG01018473.1/17089-17170 135651:Caenorhabditis
brenneri
Length = 82
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 ggcaagatgttggcatagctgaa 40
|||||||||||||||||||||||
Sbjct: 15 ggcaagatgttggcatagctgaa 37
>RF00661;mir-31;ABKE01002614.1/3132-3048 54126:Pristionchus
pacificus
Length = 85
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 aggcaagatgttggcatagctga 39
|||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctga 36
>RF00661;mir-31;AAWZ01002824.1/52915-52993 28377:Anolis
carolinensis (green anole)
Length = 79
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 aggcaagatgttggcatagctga 39
|||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctga 36
>RF00661;mir-31;AAGJ02119479.1/16120-16038 7668:Strongylocentrotus
purpuratus
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 aggcaagatgttggcatagctg 38
||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctg 35
>RF00661;mir-31;AAPN01033181.1/1752-1830 9258:Ornithorhynchus
anatinus (platypus)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 aggcaagatgttggcatagctg 38
||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctg 35
>RF00661;mir-31;AC189661.2/146363-146285 9031:Gallus gallus
(chicken)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 aggcaagatgttggcatagctg 38
||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctg 35
>RF00661;mir-31;AANH01007167.1/95060-94981 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 aggcaagatgttggcatagctg 38
||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctg 35
