miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00828;mir-75;U40422.1/34313-34409 6239:Caenorhabditis elegans
Length = 97
Score = 192 bits (97), Expect = 6e-49
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 ttcttgttgctttgaagaattgcagtcggttgcaagcttaaatacaaatccgaattgtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttcttgttgctttgaagaattgcagtcggttgcaagcttaaatacaaatccgaattgtta 60
Query: 61 ttaaagctaccaaccggcttcaagtctgaaagagcag 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttaaagctaccaaccggcttcaagtctgaaagagcag 97
>RF00828;mir-75;ABLE02006370.1/3182-3275 281687:Caenorhabditis
japonica
Length = 94
Score = 71.9 bits (36), Expect = 1e-12
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 20 ttgcagtcggttgcaagcttaaatacaaatccgaattgttattaaagctaccaaccggct 79
||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||
Sbjct: 20 ttgcagtcggttgcaagcttaaatacaga---caatagttattaaagctaccaaccggct 76
Query: 80 tcaagtctga 89
|||| ||||
Sbjct: 77 ccaagactga 86
>RF00828;mir-75;ABEG01000826.1/39710-39613 135651:Caenorhabditis
brenneri
Length = 98
Score = 56.0 bits (28), Expect = 9e-08
Identities = 53/60 (88%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 25 gtcggttgcaagcttaaatacaaatccg-aattgttattaaagctaccaaccggcttcaa 83
||||||||||||||| |||||| | | ||||| |||||||||||||||||||||||||
Sbjct: 25 gtcggttgcaagcttcaatacatttatgaaattgatattaaagctaccaaccggcttcaa 84
>RF00828;mir-75;CAAC02000448.1/1374161-1374062 6238:Caenorhabditis
briggsae
Length = 100
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 17 gaattgcagtcggttgcaagcttaaataca 46
||||||||||||||||||||||| ||||||
Sbjct: 17 gaattgcagtcggttgcaagcttcaataca 46
>RF00828;mir-75;AAGD02008731.1/12413-12314 31234:Caenorhabditis
remanei
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 55 ttgttattaaagctaccaaccggcttca 82
|||||||||||||||||||||| |||||
Sbjct: 58 ttgttattaaagctaccaaccgacttca 85
