miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00827;mir-77;Z81124.1/29149-29248 6239:Caenorhabditis elegans
Length = 100
Score = 198 bits (100), Expect = 9e-51
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 gcatctgccaaaccgcccgtttggatggttgtgctctgaggaaatacgcacagaatgtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcatctgccaaaccgcccgtttggatggttgtgctctgaggaaatacgcacagaatgtca 60
Query: 61 tttcatcaggccatagctgtccaaattggtatagagtttg 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttcatcaggccatagctgtccaaattggtatagagtttg 100
>RF00827;mir-77;AAGD02003971.1/5795-5695 31234:Caenorhabditis
remanei
Length = 101
Score = 91.7 bits (46), Expect = 2e-18
Identities = 66/72 (91%), Gaps = 3/72 (4%)
Strand = Plus / Plus
Query: 19 gtttggatggttgtgctctgaggaaatacg---cacagaatgtcatttcatcaggccata 75
|||||||||| ||||||||||||||||||| || | ||||||||||||||||||||||
Sbjct: 19 gtttggatggctgtgctctgaggaaatacggctcataaaatgtcatttcatcaggccata 78
Query: 76 gctgtccaaatt 87
||||||||||||
Sbjct: 79 gctgtccaaatt 90
>RF00827;mir-77;ABEG01008878.1/38058-37964 135651:Caenorhabditis
brenneri
Length = 95
Score = 65.9 bits (33), Expect = 9e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 56 tgtcatttcatcaggccatagctgtccaaattg 88
|||||||||||||||||||||||||||||||||
Sbjct: 54 tgtcatttcatcaggccatagctgtccaaattg 86
>RF00827;mir-77;CAAC02000490.1/201259-201155 6238:Caenorhabditis
briggsae
Length = 105
Score = 65.9 bits (33), Expect = 9e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 55 atgtcatttcatcaggccatagctgtccaaatt 87
|||||||||||||||||||||||||||||||||
Sbjct: 63 atgtcatttcatcaggccatagctgtccaaatt 95
>RF00827;mir-77;AAGD02000430.1/4126-4038 31234:Caenorhabditis
remanei
Length = 89
Score = 63.9 bits (32), Expect = 4e-10
Identities = 58/67 (86%), Gaps = 6/67 (8%)
Strand = Plus / Plus
Query: 19 gtttggatggttgtgctctgaggaaatacgcacagaatgtcatttcatcaggccatagct 78
|||||||||| ||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 19 gtttggatggctgtgctctgaggaaacacgg------tgtcatttcatcaggccatagct 72
Query: 79 gtccaaa 85
|||||||
Sbjct: 73 gtccaaa 79
>RF00827;mir-77;ABLE02009920.1/13701-13802 281687:Caenorhabditis
japonica
Length = 102
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 59 catttcatcaggccatagctgtccaaa 85
|||||||||||||||||| ||||||||
Sbjct: 64 catttcatcaggccatagttgtccaaa 90
