miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00237;mir-9;Z81467.1/13319-13384 6239:Caenorhabditis elegans
Length = 66
Score = 131 bits (66), Expect = 2e-30
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 17 atctttggtgattcagcttcaatgattggctacaggtttctttcataaagctaggttacc 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atctttggtgattcagcttcaatgattggctacaggtttctttcataaagctaggttacc 60
Query: 77 aaagct 82
||||||
Sbjct: 61 aaagct 66
>RF00237;mir-9;ABLE02000370.1/4844-4906 281687:Caenorhabditis
japonica
Length = 63
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 57 tttcataaagctaggttaccaaagct 82
||||||||||||||||||||||||||
Sbjct: 38 tttcataaagctaggttaccaaagct 63
>RF00237;mir-9;CAAC02000589.1/144634-144698 6238:Caenorhabditis
briggsae
Length = 65
Score = 52.0 bits (26), Expect = 1e-06
Identities = 57/66 (86%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 17 atctttggtgattcagcttcaatgattggctacaggtttctttcataaagctaggttacc 76
||||||||||||||||||| |||||| | | ||| |||| |||||||||||||||||
Sbjct: 1 atctttggtgattcagcttaaatgatagaattcagacgtctt-cataaagctaggttacc 59
Query: 77 aaagct 82
||||||
Sbjct: 60 aaagct 65
>RF00237;mir-9;AAQA01000025.1/15457-15396 6279:Brugia malayi
Length = 62
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 ttcataaagctaggttaccaaagct 82
|||||||||||||||||||||||||
Sbjct: 38 ttcataaagctaggttaccaaagct 62
>RF00237;mir-9;AAGD02008921.1/11473-11541 31234:Caenorhabditis
remanei
Length = 69
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 ttcataaagctaggttaccaaagct 82
|||||||||||||||||||||||||
Sbjct: 45 ttcataaagctaggttaccaaagct 69
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 atctttggtgattcagcttcaatgat 42
||||||||||||||||||| ||||||
Sbjct: 1 atctttggtgattcagcttaaatgat 26
>RF00237;mir-9;ABEG01008189.1/7393-7325 135651:Caenorhabditis
brenneri
Length = 69
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 ttcataaagctaggttaccaaagct 82
|||||||||||||||||||||||||
Sbjct: 45 ttcataaagctaggttaccaaagct 69
>RF00237;mir-9;ABKE01001679.1/8647-8709 54126:Pristionchus
pacificus
Length = 63
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 ttcataaagctaggttaccaaagct 82
|||||||||||||||||||||||||
Sbjct: 39 ttcataaagctaggttaccaaagct 63
>RF00237;mir-9;ABIR01000787.1/71736-71795 6334:Trichinella
spiralis
Length = 60
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tcataaagctaggttaccaaagct 82
||||||||||||||||||||||||
Sbjct: 37 tcataaagctaggttaccaaagct 60
>RF00237;mir-9;ABJB010367147.1/2213-2272 6945:Ixodes scapularis
(black-legged tick)
Length = 60
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 tcataaagctaggttaccaaag 80
||||||||||||||||||||||
Sbjct: 37 tcataaagctaggttaccaaag 58
