miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00817;mir-80;Z22175.1/1056-957 6239:Caenorhabditis elegans
Length = 100
Score = 194 bits (98), Expect = 1e-49
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1 atggacactcgttcgctcagctttcgacatgattctgaacaatccgcaagcccatgttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggacactcgttcgctcagctttcgacatgattctgaacaatccgcaagcccatgttgt 60
Query: 61 tgagatcattagttgaaagccgaatgatcagagatatc 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgagatcattagttgaaagccgaatgatcagagatatc 98
>RF00817;mir-80;AAGD02008136.1/2438-2337 31234:Caenorhabditis
remanei
Length = 102
Score = 101 bits (51), Expect = 2e-21
Identities = 76/83 (91%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 3 ggacactcgttcgctcagctttcgacatgattctgaacaatccg-caagcccatgttgtt 61
|||||||| ||||||||||||||||||||||||| |||||| || | || | ||||||||
Sbjct: 3 ggacactctttcgctcagctttcgacatgattctaaacaatacgtcgagacaatgttgtt 62
Query: 62 gagatcattagttgaaagccgaa 84
|||||||||||||||||||||||
Sbjct: 63 gagatcattagttgaaagccgaa 85
>RF00817;mir-80;ABLE02016062.1/2993-2893 281687:Caenorhabditis
japonica
Length = 101
Score = 89.7 bits (45), Expect = 6e-18
Identities = 70/77 (90%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 13 tcgctcagctttcgacatgattctgaacaat-ccgcaagcccatgttgttgagatcatta 71
||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct: 13 tcgctcagctttcgacatgattctgaacaattccacacatttatgttgttgagatcatta 72
Query: 72 gttgaaagccgaatgat 88
|||||||||||||||||
Sbjct: 73 gttgaaagccgaatgat 89
