miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00728;mir-81;U41531.2/14198-14299 6239:Caenorhabditis elegans
Length = 102
Score = 202 bits (102), Expect = 7e-52
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 4 agtgccatcgtgcccaacagtcggttttcaccgtgatctgagagcaatccaaaaatgctt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtgccatcgtgcccaacagtcggttttcaccgtgatctgagagcaatccaaaaatgctt 60
Query: 64 ttctgagatcatcgtgaaagctagttgttggtctacgggctt 105
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttctgagatcatcgtgaaagctagttgttggtctacgggctt 102
>RF00728;mir-81;CAAC02000448.1/1314112-1314010 6238:Caenorhabditis
briggsae
Length = 103
Score = 87.7 bits (44), Expect = 3e-17
Identities = 78/88 (88%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 6 tgccatcgtgcccaacagtcggttttcaccgtgatctgagagcaatc-caaaaatgcttt 64
|||||||||| ||| ||||||||||||| ||||||||||||||| | | |||||||
Sbjct: 3 tgccatcgtgattaacggtcggttttcaccttgatctgagagcaataaccagaatgctta 62
Query: 65 tctgagatcatcgtgaaagctagttgtt 92
||||||||||||||||||||||||||||
Sbjct: 63 tctgagatcatcgtgaaagctagttgtt 90
>RF00728;mir-81;AAGD02002337.1/178830-178730 31234:Caenorhabditis
remanei
Length = 101
Score = 81.8 bits (41), Expect = 2e-15
Identities = 75/85 (88%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 6 tgccatcgtgcccaacagtcggttttcaccgtgatctgagagcaatccaaaaatgctttt 65
|||| ||||| ||| ||||||||||||||| |||||||||||| | | | ||||||| |
Sbjct: 3 tgccctcgtggccagcagtcggttttcaccttgatctgagagctaaac-ataatgcttat 61
Query: 66 ctgagatcatcgtgaaagctagttg 90
|||||||||||||||||||||||||
Sbjct: 62 ctgagatcatcgtgaaagctagttg 86
>RF00728;mir-81;ABEG01000824.1/7077-6979 135651:Caenorhabditis
brenneri
Length = 99
Score = 73.8 bits (37), Expect = 4e-13
Identities = 68/76 (89%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 18 caacagtcggttttcaccgtgatctgagagcaatccaaaaatgcttttctgagatcatcg 77
|||||||||||||||||| |||||||||||| ||| || |||| | ||||||||||||
Sbjct: 15 caacagtcggttttcaccttgatctgagagctatctgaa--tgctat-ctgagatcatcg 71
Query: 78 tgaaagctagttgttg 93
||||||||||||||||
Sbjct: 72 tgaaagctagttgttg 87
>RF00728;mir-81;ABLE02006266.1/6774-6872 281687:Caenorhabditis
japonica
Length = 99
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 65 tctgagatcatcgtgaaagctagttgttggtctacgggctt 105
||||||||||||||||||||||||||| ||| |||| ||||
Sbjct: 59 tctgagatcatcgtgaaagctagttgtcggtttacgtgctt 99
>RF00728;mir-81;U41531.2/18477-18379 6239:Caenorhabditis elegans
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 65 tctgagatcatcgtgaaagctagttgtt 92
|||||||||||||||||||| |||||||
Sbjct: 59 tctgagatcatcgtgaaagccagttgtt 86
>RF00728;mir-81;AAGD02002337.1/175857-175956 31234:Caenorhabditis
remanei
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 65 tctgagatcatcgtgaaagctagttgtt 92
|||||||||||||||||||| |||||||
Sbjct: 60 tctgagatcatcgtgaaagccagttgtt 87
>RF00728;mir-81;ABLE02006267.1/2400-2303 281687:Caenorhabditis
japonica
Length = 98
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 ttctgagatcatcgtgaaagctagttg 90
||||||||||||||||||||| |||||
Sbjct: 57 ttctgagatcatcgtgaaagccagttg 83
>RF00728;mir-81;CAAC02000448.1/1311085-1311186 6238:Caenorhabditis
briggsae
Length = 102
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 tctgagatcatcgtgaaagctagttg 90
|||||||||||||||||||| |||||
Sbjct: 62 tctgagatcatcgtgaaagccagttg 87
>RF00728;mir-81;ABEG01000824.1/4017-4115 135651:Caenorhabditis
brenneri
Length = 99
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 tctgagatcatcgtgaaagctagttg 90
|||||||||||||||||||| |||||
Sbjct: 59 tctgagatcatcgtgaaagccagttg 84
