miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00728;mir-81;U41531.2/18477-18379 6239:Caenorhabditis elegans
Length = 99
Score = 192 bits (97), Expect = 6e-49
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 gaaataggttcttttagcaaccggttttctctgtgatctacagaatgacagctaatcgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaaataggttcttttagcaaccggttttctctgtgatctacagaatgacagctaatcgtc 60
Query: 61 tgagatcatcgtgaaagccagttgtttttatgaactc 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgagatcatcgtgaaagccagttgtttttatgaactc 97
>RF00728;mir-81;AAGD02002337.1/175857-175956 31234:Caenorhabditis
remanei
Length = 100
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 59 tctgagatcatcgtgaaagccagttgttt 87
|||||||||||||||||||||||||||||
Sbjct: 60 tctgagatcatcgtgaaagccagttgttt 88
>RF00728;mir-81;ABLE02006267.1/2400-2303 281687:Caenorhabditis
japonica
Length = 98
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 59 tctgagatcatcgtgaaagccagttg 84
||||||||||||||||||||||||||
Sbjct: 58 tctgagatcatcgtgaaagccagttg 83
>RF00728;mir-81;CAAC02000448.1/1311085-1311186 6238:Caenorhabditis
briggsae
Length = 102
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 59 tctgagatcatcgtgaaagccagttg 84
||||||||||||||||||||||||||
Sbjct: 62 tctgagatcatcgtgaaagccagttg 87
>RF00728;mir-81;ABEG01000824.1/4017-4115 135651:Caenorhabditis
brenneri
Length = 99
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 59 tctgagatcatcgtgaaagccagttg 84
||||||||||||||||||||||||||
Sbjct: 59 tctgagatcatcgtgaaagccagttg 84
>RF00728;mir-81;CAAC02000448.1/1314112-1314010 6238:Caenorhabditis
briggsae
Length = 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 59 tctgagatcatcgtgaaagccagttgtt 86
|||||||||||||||||||| |||||||
Sbjct: 63 tctgagatcatcgtgaaagctagttgtt 90
>RF00728;mir-81;ABEG01000824.1/7077-6979 135651:Caenorhabditis
brenneri
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 59 tctgagatcatcgtgaaagccagttgtt 86
|||||||||||||||||||| |||||||
Sbjct: 59 tctgagatcatcgtgaaagctagttgtt 86
>RF00728;mir-81;U41531.2/14198-14299 6239:Caenorhabditis elegans
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 59 tctgagatcatcgtgaaagccagttgtt 86
|||||||||||||||||||| |||||||
Sbjct: 62 tctgagatcatcgtgaaagctagttgtt 89
>RF00728;mir-81;ABLE02006266.1/6774-6872 281687:Caenorhabditis
japonica
Length = 99
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 59 tctgagatcatcgtgaaagccagttgt 85
|||||||||||||||||||| ||||||
Sbjct: 59 tctgagatcatcgtgaaagctagttgt 85
>RF00728;mir-81;AAGD02002337.1/178830-178730 31234:Caenorhabditis
remanei
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 tctgagatcatcgtgaaagccagttg 84
|||||||||||||||||||| |||||
Sbjct: 61 tctgagatcatcgtgaaagctagttg 86
