miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00812;mir-83;U41012.1/15999-16108 6239:Caenorhabditis elegans
Length = 110
Score = 194 bits (98), Expect = 1e-49
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1 agcaccactcggaaccactgaatttatgtgtgtacttgacggccaacaagagcatcgatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 agcaccactcggaaccactgaatttatgtgtgtacttgacggccaacaagagcatcgatc 66
Query: 61 tagcaccatataaattcagtaatttcgcgtcgagagct 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 67 tagcaccatataaattcagtaatttcgcgtcgagagct 104
>RF00812;mir-83;ABLE02009752.1/5305-5197 281687:Caenorhabditis
japonica
Length = 109
Score = 85.7 bits (43), Expect = 1e-16
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 11 ggaaccactgaatttatgtgtgtacttgacggccaacaagagcatcgatctagcaccata 70
|||| |||||| |||| |||||| |||||||||| | ||||| |||||||||||||||
Sbjct: 16 ggaagcactgagtttacgtgtgtgcttgacggccttctcgagcaacgatctagcaccata 75
Query: 71 taaattcagtaatttcgcgtcgagagc 97
||||||||||| ||||| |||||||||
Sbjct: 76 taaattcagtattttcgagtcgagagc 102
>RF00812;mir-83;CAAC02000544.1/241286-241176 6238:Caenorhabditis
briggsae
Length = 111
Score = 85.7 bits (43), Expect = 1e-16
Identities = 71/79 (89%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 2 gcaccactcggaaccactgaatttatgtgtgtacttgacggccaacaagagcatcgatct 61
|||||||||| || ||||| ||||||||||||||||||||| | || ||||| ||||||
Sbjct: 8 gcaccactcgaaaaaactgagtttatgtgtgtacttgacggcgatca-gagcaacgatct 66
Query: 62 agcaccatataaattcagt 80
|||||||||||||||||||
Sbjct: 67 agcaccatataaattcagt 85
>RF00812;mir-83;ABEG01004581.1/14903-14793 135651:Caenorhabditis
brenneri
Length = 111
Score = 69.9 bits (35), Expect = 6e-12
Identities = 76/87 (87%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 2 gcaccactcggaaccactgaatttatgtgtgtactt-gacggccaacaagagcatcgatc 60
||||||||||||| ||||| ||||| || |||||| |||||||| | ||||| |||||
Sbjct: 8 gcaccactcggaaaaactgagtttatttgagtacttagacggccatta-gagcaacgatc 66
Query: 61 tagcaccatataaattcagtaatttcg 87
||||||||||||||||||||| |||||
Sbjct: 67 tagcaccatataaattcagtattttcg 93
