miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00808;mir-86;AL132860.1/102935-102841 6239:Caenorhabditis
elegans
Length = 95
Score = 188 bits (95), Expect = 9e-48
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 1 cgtgtccacgccgtctaagtgaatgctttgccacagtcttcgatgttctgaaatgaagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgtgtccacgccgtctaagtgaatgctttgccacagtcttcgatgttctgaaatgaagcc 60
Query: 61 tgggctcagattcgcttaggccggagtttgacacg 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 tgggctcagattcgcttaggccggagtttgacacg 95
>RF00808;mir-86;AAGD02000059.1/34982-35079 31234:Caenorhabditis
remanei
Length = 98
Score = 105 bits (53), Expect = 1e-22
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 9 cgccgtctaagtgaatgctttgccacagtcttcgatgttctgaaatgaagcctgggctca 68
||||||||||||||||||||||||||||||||||| | | |||||||||||||||| |
Sbjct: 9 cgccgtctaagtgaatgctttgccacagtcttcgaccatgtcaaatgaagcctgggctaa 68
Query: 69 gattcgcttaggccggagttt 89
|||||||||||||||| ||||
Sbjct: 69 gattcgcttaggccggcgttt 89
>RF00808;mir-86;CAAC02000515.1/635706-635609 6238:Caenorhabditis
briggsae
Length = 98
Score = 85.7 bits (43), Expect = 1e-16
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 10 gccgtctaagtgaatgctttgccacagtcttcgatgttctgaaatgaagcctgggctcag 69
||||| ||||||||||||||||||||||||||||| | | | |||||||||||||| ||
Sbjct: 10 gccgtttaagtgaatgctttgccacagtcttcgatcatgtcacatgaagcctgggcttag 69
Query: 70 attcgcttaggccgg 84
|||| ||||||||||
Sbjct: 70 attcacttaggccgg 84
>RF00808;mir-86;ABLE02016789.1/3211-3313 281687:Caenorhabditis
japonica
Length = 103
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 10 gccgtctaagtgaatgctttgccacagtcttc 41
|||| |||||||||||||||||||||||||||
Sbjct: 10 gccggctaagtgaatgctttgccacagtcttc 41
>RF00808;mir-86;AAQA01000542.1/5785-5693 6279:Brugia malayi
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 taagtgaatgctttgccacagtctt 40
|||||||||||||||||||||||||
Sbjct: 16 taagtgaatgctttgccacagtctt 40
