miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00239;mir-124;Z72504.1/8327-8413 6239:Caenorhabditis elegans
Length = 87
Score = 172 bits (87), Expect = 5e-43
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 6 acttgtcatctggcatgcaccctagtgactttagtggacatctaagtcttccaactaagg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acttgtcatctggcatgcaccctagtgactttagtggacatctaagtcttccaactaagg 60
Query: 66 cacgcggtgaatgccacgtggccatga 92
|||||||||||||||||||||||||||
Sbjct: 61 cacgcggtgaatgccacgtggccatga 87
>RF00239;mir-124;ABEG01011177.1/3244-3158 135651:Caenorhabditis
brenneri
Length = 87
Score = 105 bits (53), Expect = 1e-22
Identities = 76/81 (93%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 8 ttgtcatctggcatgcaccctagtgactttagtggacatct-aagtcttccaactaaggc 66
|||||||||||||| |||| |||||||||||||||||||| |||| |||||||||||||
Sbjct: 3 ttgtcatctggcatacacctgagtgactttagtggacatctgaagt-ttccaactaaggc 61
Query: 67 acgcggtgaatgccacgtggc 87
|||||||||||||||||||||
Sbjct: 62 acgcggtgaatgccacgtggc 82
>RF00239;mir-124;CAAC02000470.1/381134-381048 6238:Caenorhabditis
briggsae
Length = 87
Score = 79.8 bits (40), Expect = 6e-15
Identities = 57/60 (95%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 29 agtgactttagtggacatcta-agtcttccaactaaggcacgcggtgaatgccacgtggc 87
|||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||
Sbjct: 24 agtgactttagtggacatgtatagt-ttccaactaaggcacgcggtgaatgccacgtggc 82
>RF00239;mir-124;ABLE02011614.1/2350-2264 281687:Caenorhabditis
japonica
Length = 87
Score = 71.9 bits (36), Expect = 1e-12
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 8 ttgtcatctggcatgcaccctagtgactttagtggacatctaagtcttccaactaaggca 67
|||||||||||| | |||| ||||||||||||||||| | ||||||||||||||
Sbjct: 3 ttgtcatctggcgtccacctgagtgactttagtggacaatttttggttccaactaaggca 62
Query: 68 cgcggtgaatgccacgtggc 87
||||||||||||||||||||
Sbjct: 63 cgcggtgaatgccacgtggc 82
>RF00239;mir-124;ABKE01011138.1/1481-1398 54126:Pristionchus
pacificus
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 aactaaggcacgcggtgaatgcca 81
||||||||||||||||||||||||
Sbjct: 50 aactaaggcacgcggtgaatgcca 73
>RF00239;mir-124;AAWT01074852.1/5580-5657 79327:Schmidtea
mediterranea
Length = 78
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 actaaggcacgcggtgaatgcca 81
|||||||||||||||||||||||
Sbjct: 44 actaaggcacgcggtgaatgcca 66
>RF00239;mir-124;ABLA01036893.1/860-781 51029:Heterodera glycines
Length = 80
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 actaaggcacgcggtgaatgcca 81
|||||||||||||||||||||||
Sbjct: 47 actaaggcacgcggtgaatgcca 69
>RF00239;mir-124;BAAF04060426.1/3450-3529 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 51 gtcttccaactaaggcacgcggtgaatgcca 81
||||| ||| |||||||||||||||||||||
Sbjct: 39 gtcttacaattaaggcacgcggtgaatgcca 69
