miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00851;mir-230;U40412.1/21083-21180 6239:Caenorhabditis elegans
Length = 98
Score = 194 bits (98), Expect = 1e-49
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1 ttgatgtaatgccgtcacttggtcggcgatttaatattatcagaacataggaaattgtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgatgtaatgccgtcacttggtcggcgatttaatattatcagaacataggaaattgtta 60
Query: 61 gtattagttgtgcgaccaggagacggtattcgcatatt 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtattagttgtgcgaccaggagacggtattcgcatatt 98
>RF00851;mir-230;ABLE02007980.1/14407-14312 281687:Caenorhabditis
japonica
Length = 96
Score = 71.9 bits (36), Expect = 1e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 53 aattgttagtattagttgtgcgaccaggagacggta 88
||||||||||||||||||||||||||||||||||||
Sbjct: 53 aattgttagtattagttgtgcgaccaggagacggta 88
>RF00851;mir-230;AAGD02000028.1/339602-339506 31234:Caenorhabditis
remanei
Length = 97
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 59 tagtattagttgtgcgaccaggagacggtatt 90
||||||||||||||||||||||||||||||||
Sbjct: 57 tagtattagttgtgcgaccaggagacggtatt 88
>RF00851;mir-230;ABEG01000044.1/3376-3470 135651:Caenorhabditis
brenneri
Length = 95
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 59 tagtattagttgtgcgaccaggagacggt 87
|||||||||||||| ||||||||||||||
Sbjct: 57 tagtattagttgtgtgaccaggagacggt 85
>RF00851;mir-230;CAAC02000521.1/3562400-3562495
6238:Caenorhabditis briggsae
Length = 96
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tagtattagttgtgcgaccagga 81
|||||||||||||||||||||||
Sbjct: 57 tagtattagttgtgcgaccagga 79
