miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00852;mir-231;AC006679.2/6436-6354 6239:Caenorhabditis elegans
Length = 83
Score = 165 bits (83), Expect = 1e-40
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 9 caggttgttctgactgtttcaaaagcttgtagtatcttaataaataaacatataagctcg 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caggttgttctgactgtttcaaaagcttgtagtatcttaataaataaacatataagctcg 60
Query: 69 tgatcaacaggcagaacaactcg 91
|||||||||||||||||||||||
Sbjct: 61 tgatcaacaggcagaacaactcg 83
>RF00852;mir-231;FJ362359.1/41851-41768 135651:Caenorhabditis
brenneri
Length = 84
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 59 tataagctcgtgatcaacaggcagaacaact 89
|||||||||||||||||||||||| ||||||
Sbjct: 52 tataagctcgtgatcaacaggcaggacaact 82
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 12 gttgttctgactgtttcaaaagctt 36
|||||||||||||||||||||||||
Sbjct: 5 gttgttctgactgtttcaaaagctt 29
>RF00852;mir-231;ABLE02012124.1/4145-4219 281687:Caenorhabditis
japonica
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tataagctcgtgatcaacaggcag 82
||||||||||||||||||||||||
Sbjct: 43 tataagctcgtgatcaacaggcag 66
>RF00852;mir-231;CAAC02000486.1/217689-217765 6238:Caenorhabditis
briggsae
Length = 77
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 59 tataagctcgtgatcaacaggcagaacaact 89
||||||||||||| |||||||||| ||||||
Sbjct: 45 tataagctcgtgaacaacaggcaggacaact 75
