miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00857;mir-233;Z67738.1/505-408 6239:Caenorhabditis elegans
Length = 98
Score = 194 bits (98), Expect = 1e-49
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1 atatagcatctttctgtctcgcccatcccgttgctccaatattctaacaacaagtgatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atatagcatctttctgtctcgcccatcccgttgctccaatattctaacaacaagtgatta 60
Query: 61 ttgagcaatgcgcatgtgcgggatagactgatggctgc 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgagcaatgcgcatgtgcgggatagactgatggctgc 98
>RF00857;mir-233;AAGD02005858.1/36439-36537 31234:Caenorhabditis
remanei
Length = 99
Score = 71.9 bits (36), Expect = 1e-12
Identities = 64/72 (88%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 13 tctgtctcgcccatcccgttgctccaatattctaacaaca-agtgattattgagcaatgc 71
|||||| ||| ||||| |||| |||||||||| |||| | |||||||||||||||||||
Sbjct: 13 tctgtcccgctcatcctgttgttccaatattccaacagcccagtgattattgagcaatgc 72
Query: 72 gcatgtgcggga 83
||||||||||||
Sbjct: 73 gcatgtgcggga 84
>RF00857;mir-233;CAAC02000532.1/1029462-1029561
6238:Caenorhabditis briggsae
Length = 100
Score = 60.0 bits (30), Expect = 6e-09
Identities = 69/81 (85%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 5 agcatctttctgtctcgcccatcccgttgctccaatattctaacaacaagt--gattatt 62
||||| |||||||| ||| |||||| ||| |||||||||| ||| | || |||||||
Sbjct: 5 agcatttttctgtcccgcgcatccctttgttccaatattcaaaccagtagaaagattatt 64
Query: 63 gagcaatgcgcatgtgcggga 83
|||||||||||||||||||||
Sbjct: 65 gagcaatgcgcatgtgcggga 85
>RF00857;mir-233;ABLE02001993.1/11907-11998 281687:Caenorhabditis
japonica
Length = 92
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 55 tgattattgagcaatgcgcatgtgcggga 83
|||||||||||||||||||||||||||||
Sbjct: 49 tgattattgagcaatgcgcatgtgcggga 77
